Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89210 | Sorghum | cytosol | 51.08 | 89.87 |
| EER92591 | Sorghum | cytosol | 73.38 | 79.07 |
| EER96363 | Sorghum | cytosol | 73.38 | 79.07 |
| TraesCS5D01G269800.1 | Wheat | cytosol | 74.1 | 76.3 |
| EER97248 | Sorghum | cytosol | 74.1 | 75.74 |
| HORVU7Hr1G109650.2 | Barley | cytosol | 76.26 | 75.71 |
| TraesCS5B01G260700.1 | Wheat | cytosol | 73.38 | 75.56 |
| TraesCS6D01G137400.1 | Wheat | cytosol | 72.66 | 74.81 |
| TraesCS6A01G148100.1 | Wheat | cytosol | 72.66 | 74.81 |
| TraesCS7D01G474200.1 | Wheat | cytosol | 74.1 | 74.1 |
| TraesCS7B01G390900.1 | Wheat | cytosol | 74.1 | 74.1 |
| TraesCS7B01G390800.1 | Wheat | cytosol | 74.1 | 74.1 |
| TraesCS7A01G487500.1 | Wheat | cytosol | 74.1 | 74.1 |
| TraesCS1B01G241200.1 | Wheat | cytosol | 74.1 | 74.1 |
| TraesCS7D01G474300.1 | Wheat | cytosol | 73.38 | 73.38 |
| TraesCS6B01G176400.1 | Wheat | cytosol | 71.22 | 73.33 |
| EER99330 | Sorghum | cytosol | 74.1 | 72.03 |
| EER97249 | Sorghum | cytosol | 72.66 | 71.63 |
| TraesCS1D01G228700.1 | Wheat | cytosol | 71.22 | 71.22 |
| KXG35893 | Sorghum | cytosol | 71.22 | 69.72 |
| HORVU5Hr1G072680.1 | Barley | cytosol | 73.38 | 67.55 |
| OQU89357 | Sorghum | cytosol, extracellular | 59.71 | 65.87 |
| KXG39742 | Sorghum | cytosol | 63.31 | 61.54 |
| TraesCS1A01G227100.1 | Wheat | cytosol | 72.66 | 59.76 |
| EES02888 | Sorghum | cytosol | 58.27 | 52.26 |
| EES17768 | Sorghum | cytosol | 58.27 | 52.26 |
| EER96746 | Sorghum | cytosol | 55.4 | 50.33 |
| EER88734 | Sorghum | cytosol | 55.4 | 50.33 |
| Os07t0489500-00 | Rice | cytosol | 73.38 | 40.16 |
| KXG38267 | Sorghum | cytosol | 44.6 | 38.75 |
| KXG38689 | Sorghum | cytosol | 33.81 | 34.31 |
| KXG20618 | Sorghum | cytosol, plastid | 59.71 | 30.4 |
| EES01965 | Sorghum | cytosol | 59.71 | 27.21 |
| OQU90737 | Sorghum | cytosol | 33.09 | 26.29 |
| KXG29530 | Sorghum | cytosol | 61.15 | 22.31 |
| KXG29523 | Sorghum | cytosol | 61.15 | 22.31 |
| EER90271 | Sorghum | cytosol | 61.15 | 22.31 |
| KXG20644 | Sorghum | cytosol | 61.15 | 22.31 |
| OQU83265 | Sorghum | cytosol | 35.25 | 22.17 |
| KXG28223 | Sorghum | mitochondrion | 30.94 | 20.0 |
| EES05681 | Sorghum | cytosol | 61.15 | 18.52 |
| OQU76939 | Sorghum | cytosol, plastid | 59.71 | 18.24 |
| KXG29531 | Sorghum | cytosol | 58.27 | 17.72 |
| EES11473 | Sorghum | cytosol | 8.63 | 7.84 |
Protein Annotations
| MapMan:17.1.2.1.43 | Gene3D:2.20.28.70 | Gene3D:3.10.20.90 | EntrezGene:8054608 | UniProt:A0A1W0W4T7 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000626 | InterPro:IPR038587 | InterPro:L40e_sf |
| EnsemblPlants:OQU89356 | ProteinID:OQU89356 | ProteinID:OQU89356.1 | PFAM:PF00240 | PFAM:PF01020 | PRINTS:PR00348 |
| ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF229 | InterPro:Ribosomal_L40e | InterPro:Ribosomal_zn-bd |
| SMART:SM00213 | SMART:SM01377 | EnsemblPlantsGene:SORBI_3002G178800 | SUPFAM:SSF54236 | SUPFAM:SSF57829 | UniParc:UPI0001A839E2 |
| InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | RefSeq:XP_002460099.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr2:+:56004599..56005451
Molecular Weight (calculated)
15586.0 Da
IEP (calculated)
10.024
GRAVY (calculated)
-0.562
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTVTLEVESS DTVANVKAKI QDKEGIPPDQ QRLIFAGKQL EDERTLADYN IQKESTLHLV LRLRGGGGKG GSYPKIDLNL LQLALKYRQH
101: KMICRKCYAR NSVRAENCRK KKCGHTSDSD DLPVLKALS
101: KMICRKCYAR NSVRAENCRK KKCGHTSDSD DLPVLKALS
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
Arabidopsis Description
RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.