CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G454100.1	Wheat	cytosol, golgi, unclear	96.2	98.7
HORVU4Hr1G040980.1	Barley	cytosol	60.76	96.0
EER92591	Sorghum	cytosol	94.94	58.14
EER96363	Sorghum	cytosol	94.94	58.14
EER97248	Sorghum	cytosol	91.14	52.94
EER99330	Sorghum	cytosol	93.67	51.75
OQU89356	Sorghum	cytosol	89.87	51.08
EER97249	Sorghum	cytosol	89.87	50.35
KXG35893	Sorghum	cytosol	88.61	49.3
EER96746	Sorghum	cytosol	94.94	49.02
EER88734	Sorghum	cytosol	94.94	49.02
EES02888	Sorghum	cytosol	94.94	48.39
EES17768	Sorghum	cytosol	94.94	48.39
TraesCS7A01G466200.1	Wheat	cytosol	82.28	44.22
TraesCS6B01G115100.1	Wheat	cytosol	94.94	42.86
KXG39742	Sorghum	cytosol	72.15	39.86
HORVU7Hr1G103380.2	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	77.22	39.35
PGSC0003DMT400057275	Potato	cytosol	92.41	38.42
Os06t0673500-01	Rice	cytosol	94.94	35.89
Bra009542.1-P	Field mustard	cytosol	94.94	32.61
KXG38267	Sorghum	cytosol	64.56	31.88
OQU89357	Sorghum	cytosol, extracellular	50.63	31.75
KXG38689	Sorghum	cytosol	54.43	31.39
KXG20618	Sorghum	cytosol, plastid	94.94	27.47
EES01965	Sorghum	cytosol	94.94	24.59
OQU90737	Sorghum	cytosol	51.9	23.43
AT5G37640.1	Thale cress	cytosol	92.41	22.67
TraesCS7B01G367600.1	Wheat	cytosol	82.28	21.59
OQU83265	Sorghum	cytosol	58.23	20.81
KXG20644	Sorghum	cytosol	94.94	19.68
KXG29530	Sorghum	cytosol	94.94	19.68
EER90271	Sorghum	cytosol	94.94	19.68
KXG29523	Sorghum	cytosol	94.94	19.68
KXG28223	Sorghum	mitochondrion	51.9	19.07
OQU76939	Sorghum	cytosol, plastid	94.94	16.48
KXG29531	Sorghum	cytosol	94.94	16.41
EES05681	Sorghum	cytosol	94.94	16.34
EES11473	Sorghum	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	EntrezGene:8068793	UniProt:C5Z4A8	EnsemblPlants:EER89210	ProteinID:EER89210
ProteinID:EER89210.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	PFAM:PF00240
PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF240	SMART:SM00213
EnsemblPlantsGene:SORBI_3010G040600	SUPFAM:SSF54236	UniParc:UPI0001A895C3	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS
InterPro:Ubiquitin_dom	RefSeq:XP_002437843.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:3173568..3178694

Molecular Weight (calculated)

8881.7 Da

IEP (calculated)

9.094

GRAVY (calculated)

-0.567

Length

79 amino acids

Sequence
(BLAST)

1: MQIFVKTLTG KSITLEVESS DTIDNVKAKN KIQDKEGIPP DQQRLIFAGK QLEDGRTLAD YNIQKESTLH LVLRLRGGQ

Best Arabidopsis Sequence Match ( AT1G23410.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHTHKKVKL
101: AVLQFYKVDG SGKVQRLKKE CPSVSCGPGT FMASHFDRHY CGKCGTTYVF KKADEE

Arabidopsis Description

RPS27AAUbiquitin-40S ribosomal protein S27a-1 [Source:UniProtKB/Swiss-Prot;Acc:P59271]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.