Factsheet for PGSC0003DMT400057275

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G366400.1	Wheat	cytosol	38.42	94.81
EER89210	Sorghum	cytosol	38.42	92.41
Bra033420.1-P	Field mustard	cytosol, nucleus, plastid	33.68	90.14
CDY23226	Canola	cytosol, nucleus, plastid	33.68	90.14
TraesCS6B01G115100.1	Wheat	cytosol	72.63	78.86
PGSC0003DMT400029234	Potato	cytosol	61.05	75.32
Os06t0673500-01	Rice	cytosol	76.32	69.38
PGSC0003DMT400047686	Potato	cytosol	43.68	64.84
PGSC0003DMT400000364	Potato	cytosol	43.68	64.84
PGSC0003DMT400031900	Potato	cytosol	43.68	64.84
PGSC0003DMT400013958	Potato	cytosol	43.68	64.84
PGSC0003DMT400015022	Potato	cytosol	43.68	63.36
PGSC0003DMT400011939	Potato	cytosol	44.21	53.85
PGSC0003DMT400013321	Potato	cytosol	43.68	53.21
Solyc11g005650.1.1	Tomato	plasma membrane	31.05	52.21
TraesCS7A01G027400.1	Wheat	cytosol	54.21	47.25
AT5G37640.1	Thale cress	cytosol	80.0	47.2
PGSC0003DMT400011737	Potato	cytosol	44.21	46.41
TraesCS7B01G367600.1	Wheat	cytosol	70.53	44.52
Bra009542.1-P	Field mustard	cytosol	53.68	44.35
PGSC0003DMT400027156	Potato	cytosol	85.79	42.78
TraesCS6B01G012500.1	Wheat	cytosol	49.47	38.37
PGSC0003DMT400089149	Potato	cytosol	83.16	34.57
PGSC0003DMT400037401	Potato	cytosol	68.95	34.2
TraesCSU01G125900.1	Wheat	cytosol	52.63	32.05
TraesCS7D01G024600.1	Wheat	cytosol, mitochondrion	55.79	28.88
PGSC0003DMT400037403	Potato	cytosol	72.11	25.7
PGSC0003DMT400010171	Potato	cytosol	62.63	22.28
PGSC0003DMT400033485	Potato	cytosol	22.63	20.77
HORVU6Hr1G026280.2	Barley	plastid	38.42	18.02

Protein Annotations

MapMan:19.2.2.1.1	Gene3D:3.10.20.90	ProteinID:CAA77738	ProteinID:CAA77738.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000626	UniProt:M1C0R2	PFAM:PF00240	EnsemblPlantsGene:PGSC0003DMG400022246	PGSC:PGSC0003DMG400022246
EnsemblPlants:PGSC0003DMT400057275	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF242
SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI000295FB60	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS
InterPro:Ubiquitin_dom	EMBL:Z11672	:	:	:	:

Description

Polyubiquitin [Source:PGSC_GENE;Acc:PGSC0003DMG400022246]

Coordinates

chr7:+:56206207..56211934

Molecular Weight (calculated)

21611.2 Da

IEP (calculated)

10.611

GRAVY (calculated)

-0.517

Length

190 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL DDGRTVADYN IQKESTLHLV LRLRGGMQIF VKALTGRTIT LEVESSDTID
101: NVKAKIQDKE WIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLQ IFVKTLTGKP SPWRLRTPTP LTMSRPRSKT RRVFPQTSRG

Best Arabidopsis Sequence Match ( AT4G02890.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGF

Arabidopsis Description

UBQ14Polyubiquitin 14 [Source:UniProtKB/Swiss-Prot;Acc:Q3E7T8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.