Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- plasma membrane 3
- nucleus 1
- peroxisome 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g096290.2.1 | Tomato | cytosol | 50.44 | 44.53 |
| Solyc03g082570.2.1 | Tomato | cytosol | 50.44 | 44.53 |
| Solyc08g083120.2.1 | Tomato | cytosol, nucleus | 50.44 | 44.53 |
| Solyc08g008590.2.1 | Tomato | cytosol, nucleus | 49.56 | 41.18 |
| Solyc10g005560.2.1 | Tomato | cytosol, nucleus | 52.21 | 38.31 |
| Solyc12g098940.1.1 | Tomato | cytosol, nucleus | 51.33 | 37.18 |
| Solyc01g056940.2.1 | Tomato | nucleus | 50.44 | 36.54 |
| PGSC0003DMT400057275 | Potato | cytosol | 52.21 | 31.05 |
| Solyc12g099030.1.1 | Tomato | plastid | 51.33 | 30.53 |
| Solyc06g053210.2.1 | Tomato | cytosol | 49.56 | 29.79 |
| Os06t0673500-01 | Rice | cytosol | 53.1 | 28.71 |
| TraesCS7A01G027400.1 | Wheat | cytosol | 46.02 | 23.85 |
| Solyc11g005640.1.1 | Tomato | cytosol | 38.94 | 19.82 |
| TraesCS7D01G024600.1 | Wheat | cytosol, mitochondrion | 48.67 | 14.99 |
| Solyc07g064130.1.1 | Tomato | nucleus | 53.98 | 13.35 |
| Solyc10g006480.1.1 | Tomato | cytosol, extracellular, nucleus, unclear | 53.98 | 13.35 |
| Solyc11g005670.1.1 | Tomato | cytosol, nucleus | 60.18 | 12.73 |
| HORVU6Hr1G026280.2 | Barley | plastid | 37.17 | 10.37 |
| Solyc03g005610.2.1 | Tomato | cytosol | 23.01 | 6.47 |
Protein Annotations
| EnsemblPlants:Solyc11g005650.1.1 | EnsemblPlantsGene:Solyc11g005650.1 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | PANTHER:PTHR10666 |
| PANTHER:PTHR10666:SF240 | PFAM:PF00240 | PFscan:PS50053 | PRINTS:PR00348 | ScanProsite:PS00299 | SMART:SM00213 |
| SUPFAM:SSF54236 | UniParc:UPI0002769904 | UniProt:K4D4H8 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr11:-:487487..489131
Molecular Weight (calculated)
12774.3 Da
IEP (calculated)
5.859
GRAVY (calculated)
-0.096
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFSKFFKLI ISSWGDFFRT TSVGVICLQN HLVRCRYLFK TLTGKTITLE VESSDTSDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGQTV ADYNIQDEST
101: SILSSVYVVE CKL
101: SILSSVYVVE CKL
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
Arabidopsis Description
RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.