Factsheet for Solyc01g096290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36170.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT2G36170.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT2G36170.1	Solyc11g073060.1.1	AT3G46090.1	17259181
AT3G52590.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT3G52590.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT3G52590.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P00970_001	Banana	cytosol	100.0	100.0
GSMUA_Achr8P07770_001	Banana	cytosol, unclear	100.0	100.0
Solyc03g082570.2.1	Tomato	cytosol	100.0	100.0
Solyc08g083120.2.1	Tomato	cytosol, nucleus	100.0	100.0
KRG96204	Soybean	cytosol	99.22	99.22
VIT_08s0007g03030.t01	Wine grape	cytosol	99.22	99.22
KRH53585	Soybean	cytosol	99.22	99.22
KRH64348	Soybean	cytosol, endoplasmic reticulum	99.22	99.22
KRH67947	Soybean	cytosol	99.22	99.22
TraesCS4D01G006900.1	Wheat	cytosol	99.22	98.45
TraesCS4B01G008400.1	Wheat	cytosol	99.22	98.45
TraesCS4A01G306500.1	Wheat	cytosol	99.22	98.45
AT3G52590.1	Thale cress	cytosol	98.44	98.44
AT2G36170.1	Thale cress	cytosol	98.44	98.44
VIT_16s0098g01190.t01	Wine grape	cytosol	98.44	98.44
Zm00001d005334_P001	Maize	cytosol, plastid	97.66	96.9
EER92591	Sorghum	cytosol	97.66	96.9
EER96363	Sorghum	cytosol	97.66	96.9
Solyc08g008590.2.1	Tomato	cytosol, nucleus	99.22	93.38
PGSC0003DMT400015022	Potato	cytosol	93.75	91.6
TraesCS4B01G233100.1	Wheat	cytosol	99.22	82.47
TraesCS4A01G077000.1	Wheat	cytosol	99.22	80.38
TraesCS4D01G234300.1	Wheat	cytosol	99.22	80.38
KRG99541	Soybean	cytosol	58.59	67.57
Solyc06g053210.2.1	Tomato	cytosol	89.84	61.17
Solyc12g098940.1.1	Tomato	cytosol, nucleus	65.62	53.85
Solyc01g056940.2.1	Tomato	nucleus	65.62	53.85
Solyc10g005560.2.1	Tomato	cytosol, nucleus	64.06	53.25
Solyc11g005650.1.1	Tomato	plasma membrane	44.53	50.44
Solyc12g099030.1.1	Tomato	plastid	65.62	44.21
Solyc11g005640.1.1	Tomato	cytosol	52.34	30.18
Solyc10g006480.1.1	Tomato	cytosol, extracellular, nucleus, unclear	70.31	19.69
Solyc07g064130.1.1	Tomato	nucleus	70.31	19.69
Solyc11g005670.1.1	Tomato	cytosol, nucleus	67.19	16.1
Solyc03g005610.2.1	Tomato	cytosol	27.34	8.71

Protein Annotations

MapMan:17.1.2.1.43	Gene3D:2.20.28.70	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038587	UniProt:K4B017	InterPro:L40e_sf	PFAM:PF00240
PFAM:PF01020	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF255
InterPro:Ribosomal_L40e	InterPro:Ribosomal_zn-bd	SMART:SM00213	SMART:SM01377	SUPFAM:SSF54236	SUPFAM:SSF57829
EnsemblPlantsGene:Solyc01g096290.2	EnsemblPlants:Solyc01g096290.2.1	UniParc:UPI00016069F9	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS
InterPro:Ubiquitin_dom	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:87380143..87382150

Molecular Weight (calculated)

14688.2 Da

IEP (calculated)

10.606

GRAVY (calculated)

-0.638

Length

128 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMALARKYN QEKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Best Arabidopsis Sequence Match ( AT3G52590.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.