Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G001170.5 | Barley | cytosol | 63.06 | 63.64 |
| HORVU4Hr1G065100.3 | Barley | cytosol | 63.96 | 63.39 |
| KRG96204 | Soybean | cytosol | 68.47 | 59.38 |
| KRH53585 | Soybean | cytosol | 68.47 | 59.38 |
| KRH64348 | Soybean | cytosol, endoplasmic reticulum | 68.47 | 59.38 |
| KRH67947 | Soybean | cytosol | 68.47 | 59.38 |
| GSMUA_Achr8P32920_001 | Banana | cytosol | 67.57 | 58.59 |
| GSMUA_Achr8P07770_001 | Banana | cytosol, unclear | 67.57 | 58.59 |
| GSMUA_Achr5P00970_001 | Banana | cytosol | 67.57 | 58.59 |
| Solyc08g083120.2.1 | Tomato | cytosol, nucleus | 67.57 | 58.59 |
| Solyc03g082570.2.1 | Tomato | cytosol | 67.57 | 58.59 |
| Solyc01g096290.2.1 | Tomato | cytosol | 67.57 | 58.59 |
| PGSC0003DMT400047686 | Potato | cytosol | 67.57 | 58.59 |
| PGSC0003DMT400031900 | Potato | cytosol | 67.57 | 58.59 |
| PGSC0003DMT400013958 | Potato | cytosol | 67.57 | 58.59 |
| PGSC0003DMT400000364 | Potato | cytosol | 67.57 | 58.59 |
| VIT_16s0098g01190.t01 | Wine grape | cytosol | 67.57 | 58.59 |
| AT2G36170.1 | Thale cress | cytosol | 67.57 | 58.59 |
| AT3G52590.1 | Thale cress | cytosol | 67.57 | 58.59 |
| Zm00001d005334_P001 | Maize | cytosol, plastid | 67.57 | 58.14 |
| EER92591 | Sorghum | cytosol | 67.57 | 58.14 |
| EER96363 | Sorghum | cytosol | 67.57 | 58.14 |
| TraesCS4D01G006900.1 | Wheat | cytosol | 66.67 | 57.36 |
| TraesCS4B01G008400.1 | Wheat | cytosol | 66.67 | 57.36 |
| TraesCS4A01G306500.1 | Wheat | cytosol | 66.67 | 57.36 |
| PGSC0003DMT400015022 | Potato | cytosol | 66.67 | 56.49 |
| Solyc08g008590.2.1 | Tomato | cytosol, nucleus | 66.67 | 54.41 |
| TraesCS4B01G233100.1 | Wheat | cytosol | 66.67 | 48.05 |
| TraesCS4D01G234300.1 | Wheat | cytosol | 66.67 | 46.84 |
| TraesCS4A01G077000.1 | Wheat | cytosol | 66.67 | 46.84 |
| KRH13718 | Soybean | cytosol, endoplasmic reticulum, nucleus | 54.95 | 39.61 |
| KRH43738 | Soybean | cytosol | 54.95 | 39.61 |
| KRH74571 | Soybean | cytosol | 54.05 | 38.71 |
| KRH36782 | Soybean | nucleus | 54.05 | 38.71 |
| KRH11776 | Soybean | nucleus | 54.05 | 38.71 |
| KRH69588 | Soybean | nucleus | 54.05 | 38.71 |
| Solyc06g053210.2.1 | Tomato | cytosol | 63.96 | 37.77 |
| KRH02501 | Soybean | cytosol | 50.45 | 36.6 |
| KRH38035 | Soybean | cytosol | 27.93 | 23.85 |
| KRG91230 | Soybean | cytosol | 58.56 | 21.31 |
| KRH35592 | Soybean | cytosol | 58.56 | 21.31 |
| KRH19455 | Soybean | cytosol | 58.56 | 21.31 |
| KRH32433 | Soybean | cytosol, endoplasmic reticulum | 56.76 | 20.59 |
| KRH19453 | Soybean | cytosol | 56.76 | 16.54 |
| KRH02499 | Soybean | cytosol | 55.86 | 16.27 |
| KRH20404 | Soybean | cytosol | 55.86 | 13.57 |
| KRH20401 | Soybean | cytosol | 55.86 | 11.63 |
| KRH50099 | Soybean | cytosol, endoplasmic reticulum, nucleus | 55.86 | 11.63 |
| KRH19844 | Soybean | cytosol | 5.41 | 2.61 |
Protein Annotations
| Gene3D:2.20.28.70 | Gene3D:3.10.20.90 | MapMan:35.1 | EMBL:ACUP02011102 | EnsemblPlantsGene:GLYMA_18G152700 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 | InterPro:IPR000626 |
| InterPro:IPR038587 | UniProt:K7MSB5 | EnsemblPlants:KRG99541 | ProteinID:KRG99541 | ProteinID:KRG99541.1 | InterPro:L40e_sf |
| PFAM:PF00240 | PFAM:PF01020 | PRINTS:PR00348 | PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF255 |
| InterPro:Ribosomal_L40e | SMART:SM00213 | SUPFAM:SSF54236 | TMHMM:TMhelix | UniParc:UPI000296AB31 | InterPro:Ubiquitin |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | : | : | : | : |
Description
hypothetical protein
Coordinates
chr18:+:29227823..29228257
Molecular Weight (calculated)
13089.3 Da
IEP (calculated)
10.322
GRAVY (calculated)
-0.138
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITFKVESR DTIDNVKGKI QDKEDQQCLI FVEKQLEDGR TLADYNIKKE STFHLLLKLR GGIIKPSFMA LARKYNLDKM IFHKYAVYLF
101: LFRFLLSFMG R
101: LFRFLLSFMG R
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
Arabidopsis Description
RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.