CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31340.1	KRH42483	AT2G01950.1	19000166
AT1G31340.1	KRH58580	AT2G01950.1	19000166
AT1G31340.1	KRH10294	AT3G46090.1	17259181
AT1G31340.1	KRH23029	AT3G46090.1	17259181
AT1G31340.1	KRH24840	AT3G46090.1	17259181
AT1G31340.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13718	Soybean	cytosol, endoplasmic reticulum, nucleus	100.0	100.0
TraesCS7D01G494400.1	Wheat	cytosol	98.05	98.69
Os06t0650100-01	Rice	cytosol, extracellular, plasma membrane	98.05	98.69
TraesCS5B01G222800.1	Wheat	cytosol	98.05	98.69
TraesCS5D01G231400.1	Wheat	cytosol	98.05	98.69
TraesCS7A01G506300.1	Wheat	cytosol, plastid	98.05	98.69
TraesCS7B01G413800.1	Wheat	cytosol	98.05	98.69
EER96746	Sorghum	cytosol	98.05	98.69
EER88734	Sorghum	cytosol	98.05	98.69
Solyc10g005560.2.1	Tomato	cytosol, nucleus	98.05	98.05
PGSC0003DMT400029234	Potato	cytosol	98.05	98.05
AT1G31340.1	Thale cress	cytosol	98.05	96.79
GSMUA_Achr7P26310_001	Banana	cytosol	98.05	96.79
CDY50712	Canola	cytosol	98.05	96.79
GSMUA_Achr3P30150_001	Banana	cytosol	98.05	96.18
VIT_19s0085g00040.t01	Wine grape	cytosol, extracellular	96.75	96.13
Zm00001d036717_P001	Maize	cytosol	90.26	90.85
KRH02501	Soybean	cytosol	75.32	75.82
HORVU7Hr1G029150.2	Barley	cytosol	88.31	74.73
HORVU7Hr1G029070.1	Barley	cytosol	87.01	71.28
HORVU7Hr1G029100.1	Barley	cytosol	88.31	71.2
HORVU3Hr1G014150.2	Barley	cytosol	89.61	67.98
HORVU3Hr1G014180.3	Barley	cytosol	89.61	67.98
KRH67947	Soybean	cytosol	53.25	64.06
KRG96204	Soybean	cytosol	53.25	64.06
KRH64348	Soybean	cytosol, endoplasmic reticulum	53.25	64.06
KRH53585	Soybean	cytosol	53.25	64.06
KRH11776	Soybean	nucleus	56.49	56.13
KRH69588	Soybean	nucleus	56.49	56.13
KRH74571	Soybean	cytosol	56.49	56.13
KRH36782	Soybean	nucleus	55.84	55.48
KRG99541	Soybean	cytosol	39.61	54.95
KRH38035	Soybean	cytosol	41.56	49.23
KRH35592	Soybean	cytosol	79.87	40.33
KRG91230	Soybean	cytosol	79.87	40.33
KRH19455	Soybean	cytosol	79.87	40.33
KRH32433	Soybean	cytosol, endoplasmic reticulum	79.87	40.2
KRH19453	Soybean	cytosol	79.87	32.28
KRH02499	Soybean	cytosol	70.78	28.61
KRH20404	Soybean	cytosol	63.64	21.44
KRH19844	Soybean	cytosol	30.52	20.43
KRH50099	Soybean	cytosol, endoplasmic reticulum, nucleus	63.64	18.39
KRH20401	Soybean	cytosol	63.64	18.39

Protein Annotations

EntrezGene:100794152	EntrezGene:100800163	MapMan:19.2.2.3.1	Gene3D:3.10.20.90	EMBL:ACUP02004886	EMBL:ACUP02009779
EMBL:BT090019	UniProt:C6SXX2	EnsemblPlantsGene:GLYMA_08G168200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	ProteinID:KRH13718.1	EnsemblPlants:KRH43738	ProteinID:KRH43738	ProteinID:KRH43738.1	InterPro:Nedd8-like
PFAM:PF00240	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF230
SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI0001704D8F	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS
InterPro:Ubiquitin_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:13264985..13269272

Molecular Weight (calculated)

17245.9 Da

IEP (calculated)

5.853

GRAVY (calculated)

-0.449

Length

154 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKEYNIEGG SVLHLVLALR GGTY

Best Arabidopsis Sequence Match ( AT1G31340.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGFGLL

Arabidopsis Description

RUB1RUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178W1F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.