Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr2P15100_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G31340.1 | GSMUA_Achr2P15100_001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH13718 | Soybean | cytosol, endoplasmic reticulum, nucleus | 96.18 | 98.05 |
| KRH43738 | Soybean | cytosol | 96.18 | 98.05 |
| TraesCS7A01G506300.1 | Wheat | cytosol, plastid | 95.54 | 98.04 |
| Os06t0650100-01 | Rice | cytosol, extracellular, plasma membrane | 95.54 | 98.04 |
| TraesCS5B01G222800.1 | Wheat | cytosol | 95.54 | 98.04 |
| TraesCS5D01G231400.1 | Wheat | cytosol | 95.54 | 98.04 |
| TraesCS7B01G413800.1 | Wheat | cytosol | 95.54 | 98.04 |
| TraesCS7D01G494400.1 | Wheat | cytosol | 95.54 | 98.04 |
| EER96746 | Sorghum | cytosol | 95.54 | 98.04 |
| EER88734 | Sorghum | cytosol | 95.54 | 98.04 |
| GSMUA_Achr7P26310_001 | Banana | cytosol | 96.82 | 97.44 |
| Solyc10g005560.2.1 | Tomato | cytosol, nucleus | 95.54 | 97.4 |
| PGSC0003DMT400029234 | Potato | cytosol | 95.54 | 97.4 |
| AT1G31340.1 | Thale cress | cytosol | 95.54 | 96.15 |
| CDY50712 | Canola | cytosol | 95.54 | 96.15 |
| VIT_19s0085g00040.t01 | Wine grape | cytosol, extracellular | 94.27 | 95.48 |
| Zm00001d036717_P001 | Maize | cytosol | 87.9 | 90.2 |
| GSMUA_Achr4P04260_001 | Banana | cytosol | 57.32 | 86.54 |
| GSMUA_Achr11P... | Banana | cytosol | 44.59 | 86.42 |
| HORVU7Hr1G029150.2 | Barley | cytosol | 86.62 | 74.73 |
| HORVU7Hr1G029070.1 | Barley | cytosol | 85.35 | 71.28 |
| HORVU7Hr1G029100.1 | Barley | cytosol | 86.62 | 71.2 |
| HORVU3Hr1G014150.2 | Barley | cytosol | 87.9 | 67.98 |
| HORVU3Hr1G014180.3 | Barley | cytosol | 87.9 | 67.98 |
| GSMUA_Achr8P32920_001 | Banana | cytosol | 52.23 | 64.06 |
| GSMUA_Achr8P07770_001 | Banana | cytosol, unclear | 52.23 | 64.06 |
| GSMUA_Achr5P00970_001 | Banana | cytosol | 52.23 | 64.06 |
| GSMUA_Achr11P... | Banana | cytosol | 51.59 | 63.28 |
| GSMUA_Achr8P22260_001 | Banana | cytosol | 54.78 | 54.78 |
| GSMUA_Achr3P08430_001 | Banana | cytosol | 54.78 | 54.78 |
| GSMUA_AchrUn_... | Banana | cytosol | 53.5 | 53.5 |
| GSMUA_AchrUn_... | Banana | cytosol | 29.94 | 50.54 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular | 52.87 | 44.15 |
| GSMUA_Achr1P24990_001 | Banana | cytosol, endoplasmic reticulum, mitochondrion, plastid | 38.85 | 38.36 |
| GSMUA_Achr5P00760_001 | Banana | cytosol | 38.22 | 34.88 |
| GSMUA_Achr8P07340_001 | Banana | cytosol, plasma membrane | 29.94 | 34.06 |
| GSMUA_Achr9P30160_001 | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:19.2.2.3.1 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSMUA_Achr3G30150_001 |
| EnsemblPlants:GSMUA_Achr3P30150_001 | EnsemblPlants:GSMUA_Achr3T30150_001 | InterPro:IPR000626 | UniProt:M0SJ31 | InterPro:Nedd8-like | PFAM:PF00240 |
| PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF230 | SMART:SM00213 |
| SUPFAM:SSF54236 | UniParc:UPI0002966966 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom |
| SEG:seg | : | : | : | : | : |
Description
Ubiquitin-NEDD8-like protein RUB1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G30150_001]
Coordinates
chr3:-:29002372..29005575
Molecular Weight (calculated)
17661.5 Da
IEP (calculated)
6.815
GRAVY (calculated)
-0.445
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKEYNIEGG SVLHLVLALR GGWHRGL
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKEYNIEGG SVLHLVLALR GGWHRGL
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGFGLL
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGFGLL
Arabidopsis Description
RUB1RUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178W1F2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.