Factsheet for GSMUA_Achr8P07340_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	67.39	100.0
GSMUA_Achr9P30160_001	Banana	cytosol	44.2	79.22
AT4G05050.2	Thale cress	cytosol	99.28	59.83
Os06t0673500-01	Rice	cytosol	55.07	36.36
GSMUA_Achr4P04260_001	Banana	cytosol	23.91	31.73
GSMUA_Achr7P26310_001	Banana	cytosol	34.78	30.77
GSMUA_Achr3P30150_001	Banana	cytosol	34.06	29.94
GSMUA_Achr5P00760_001	Banana	cytosol	18.84	15.12
GSMUA_AchrUn_...	Banana	cytosol	12.32	10.83
GSMUA_Achr3P08430_001	Banana	cytosol	12.32	10.83
GSMUA_Achr8P22260_001	Banana	cytosol	12.32	10.83
GSMUA_Achr1P24990_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	12.32	10.69
GSMUA_Achr5P00970_001	Banana	cytosol	7.97	8.59
GSMUA_Achr8P32920_001	Banana	cytosol	7.97	8.59
GSMUA_Achr8P07770_001	Banana	cytosol, unclear	7.97	8.59
GSMUA_Achr11P...	Banana	cytosol	7.97	8.59
GSMUA_Achr10P...	Banana	cytosol, extracellular	7.97	5.85
GSMUA_Achr11P...	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr8P07340_001	EnsemblPlants:GSMUA_Achr8T07340_001	EnsemblPlantsGene:GSMUA_Achr8G07340_001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000626	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom
PANTHER:PTHR10666	PANTHER:PTHR10666:SF240	PFAM:PF00240	PFscan:PS50053	PRINTS:PR00348	ScanProsite:PS00299
SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI00029605B7	UniProt:M0TND7	MapMan:35.1	:

Description

Polyubiquitin [Source:GMGC_GENE;Acc:GSMUA_Achr8G07340_001]

Coordinates

chr8:+:4857209..4859491

Molecular Weight (calculated)

15512.8 Da

IEP (calculated)

7.689

GRAVY (calculated)

-0.386

Length

138 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NQRLIFAGKQ LEDGRTLADY NIQKESTLHL VLRLRGGQ

Best Arabidopsis Sequence Match ( AT4G05050.4 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGF

Arabidopsis Description

UBQ11Polyubiquitin [Source:UniProtKB/TrEMBL;Acc:Q8H0Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.