Factsheet for GSMUA_Achr8P07770_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, unclear
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36170.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166
AT3G52590.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g082570.2.1	Tomato	cytosol	100.0	100.0
GSMUA_Achr8P32920_001	Banana	cytosol	100.0	100.0
GSMUA_Achr5P00970_001	Banana	cytosol	100.0	100.0
PGSC0003DMT400031900	Potato	cytosol	100.0	100.0
Solyc01g096290.2.1	Tomato	cytosol	100.0	100.0
Solyc08g083120.2.1	Tomato	cytosol, nucleus	100.0	100.0
GSMUA_Achr11P...	Banana	cytosol	99.22	99.22
KRH67947	Soybean	cytosol	99.22	99.22
VIT_08s0007g03030.t01	Wine grape	cytosol	99.22	99.22
KRH64348	Soybean	cytosol, endoplasmic reticulum	99.22	99.22
KRH53585	Soybean	cytosol	99.22	99.22
KRG96204	Soybean	cytosol	99.22	99.22
TraesCS4A01G306500.1	Wheat	cytosol	99.22	98.45
TraesCS4B01G008400.1	Wheat	cytosol	99.22	98.45
TraesCS4D01G006900.1	Wheat	cytosol	99.22	98.45
AT3G52590.1	Thale cress	cytosol	98.44	98.44
VIT_16s0098g01190.t01	Wine grape	cytosol	98.44	98.44
AT2G36170.1	Thale cress	cytosol	98.44	98.44
Zm00001d005334_P001	Maize	cytosol, plastid	97.66	96.9
EER92591	Sorghum	cytosol	97.66	96.9
EER96363	Sorghum	cytosol	97.66	96.9
Solyc08g008590.2.1	Tomato	cytosol, nucleus	99.22	93.38
PGSC0003DMT400015022	Potato	cytosol	93.75	91.6
GSMUA_Achr11P...	Banana	cytosol	56.25	88.89
TraesCS4B01G233100.1	Wheat	cytosol	99.22	82.47
TraesCS4D01G234300.1	Wheat	cytosol	99.22	80.38
TraesCS4A01G077000.1	Wheat	cytosol	99.22	80.38
KRG99541	Soybean	cytosol	58.59	67.57
Solyc06g053210.2.1	Tomato	cytosol	89.84	61.17
GSMUA_Achr3P08430_001	Banana	cytosol	65.62	53.5
GSMUA_Achr8P22260_001	Banana	cytosol	65.62	53.5
GSMUA_Achr7P26310_001	Banana	cytosol	64.06	52.56
GSMUA_Achr3P30150_001	Banana	cytosol	64.06	52.23
GSMUA_AchrUn_...	Banana	cytosol	64.06	52.23
GSMUA_Achr10P...	Banana	cytosol, extracellular	63.28	43.09
GSMUA_Achr4P04260_001	Banana	cytosol	31.25	38.46
GSMUA_Achr1P24990_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	46.09	37.11
GSMUA_Achr5P00760_001	Banana	cytosol	38.28	28.49
GSMUA_AchrUn_...	Banana	cytosol	8.59	11.83
GSMUA_Achr8P07340_001	Banana	cytosol, plasma membrane	8.59	7.97
GSMUA_Achr9P30160_001	Banana	cytosol	2.34	3.9

Protein Annotations

MapMan:17.1.2.1.43	Gene3D:2.20.28.70	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr8G07770_001	EnsemblPlants:GSMUA_Achr8P07770_001	EnsemblPlants:GSMUA_Achr8T07770_001	InterPro:IPR000626	InterPro:IPR038587
InterPro:L40e_sf	UniProt:M0TVP4	PFAM:PF00240	PFAM:PF01020	PRINTS:PR00348	ScanProsite:PS00299
PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF255	InterPro:Ribosomal_L40e	InterPro:Ribosomal_zn-bd	SMART:SM00213
SMART:SM01377	SUPFAM:SSF54236	SUPFAM:SSF57829	UniParc:UPI00016069F9	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	:	:	:	:

Description

Ubiquitin-60S ribosomal protein L40 [Source:GMGC_GENE;Acc:GSMUA_Achr8G07770_001]

Coordinates

chr8:-:5204425..5206818

Molecular Weight (calculated)

14688.2 Da

IEP (calculated)

10.606

GRAVY (calculated)

-0.638

Length

128 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMALARKYN QEKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Best Arabidopsis Sequence Match ( AT3G52590.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.