Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G086300.1 | Wheat | cytosol | 87.65 | 59.17 |
| GSMUA_Achr5P00970_001 | Banana | cytosol | 88.89 | 56.25 |
| GSMUA_Achr8P32920_001 | Banana | cytosol | 88.89 | 56.25 |
| GSMUA_Achr8P07770_001 | Banana | cytosol, unclear | 88.89 | 56.25 |
| GSMUA_Achr11P... | Banana | cytosol | 87.65 | 55.47 |
| TraesCS4D01G218300.1 | Wheat | cytosol | 83.95 | 55.28 |
| TraesCS4B01G218100.1 | Wheat | cytosol | 86.42 | 53.03 |
| TraesCS4B01G218000.1 | Wheat | cytosol | 83.95 | 51.52 |
| TraesCS4A01G086400.1 | Wheat | cytosol | 83.95 | 51.52 |
| TraesCS4D01G218400.1 | Wheat | cytosol | 87.65 | 47.02 |
| GSMUA_Achr7P26310_001 | Banana | cytosol | 86.42 | 44.87 |
| GSMUA_Achr8P22260_001 | Banana | cytosol | 86.42 | 44.59 |
| GSMUA_Achr3P30150_001 | Banana | cytosol | 86.42 | 44.59 |
| GSMUA_Achr3P08430_001 | Banana | cytosol | 86.42 | 44.59 |
| GSMUA_AchrUn_... | Banana | cytosol | 83.95 | 43.31 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular | 86.42 | 37.23 |
| GSMUA_Achr4P04260_001 | Banana | cytosol | 46.91 | 36.54 |
| HORVU4Hr1G061900.2 | Barley | nucleus, plastid | 81.48 | 34.55 |
| GSMUA_Achr1P24990_001 | Banana | cytosol, endoplasmic reticulum, mitochondrion, plastid | 56.79 | 28.93 |
| GSMUA_Achr5P00760_001 | Banana | cytosol | 53.09 | 25.0 |
| GSMUA_Achr8P07340_001 | Banana | cytosol, plasma membrane | 0.0 | 0.0 |
| GSMUA_Achr9P30160_001 | Banana | cytosol | 0.0 | 0.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P18330_001 | EnsemblPlants:GSMUA_Achr11T18330_001 | EnsemblPlantsGene:GSMUA_Achr11G18330_001 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR000626 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | PANTHER:PTHR10666 |
| PANTHER:PTHR10666:SF242 | PFAM:PF00240 | PFscan:PS50053 | PRINTS:PR00348 | SMART:SM00213 | SUPFAM:SSF54236 |
| UniParc:UPI0002966633 | UniProt:M0RTB3 | MapMan:35.1 | : | : | : |
Description
Ubiquitin-60S ribosomal protein L40 [Source:GMGC_GENE;Acc:GSMUA_Achr11G18330_001]
Coordinates
chr11:-:19732761..19733091
Molecular Weight (calculated)
9169.9 Da
IEP (calculated)
5.668
GRAVY (calculated)
-0.581
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MQIFVKTLTG KTITLEVESS DTIDNVKARS IQDKEGIPPD QQRLIFAGKQ LEDGRTLADY NIQKESTLHL VQHLDQKPTS F
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
Arabidopsis Description
RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.