Factsheet for GSMUA_Achr9P30160_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P07340_001	Banana	cytosol, plasma membrane	79.22	44.2
TraesCS7B01G004300.1	Wheat	cytosol	59.74	21.1
GSMUA_AchrUn_...	Banana	cytosol	22.08	18.28
PGSC0003DMT400033485	Potato	cytosol	37.66	14.01
Solyc03g005610.2.1	Tomato	cytosol	40.26	7.71
HORVU5Hr1G094230.2	Barley	cytosol	48.05	5.41
GSMUA_Achr3P08430_001	Banana	cytosol	10.39	5.1
GSMUA_Achr8P22260_001	Banana	cytosol	10.39	5.1
GSMUA_AchrUn_...	Banana	cytosol	10.39	5.1
GSMUA_Achr1P24990_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	10.39	5.03
TraesCS7D01G100100.1	Wheat	cytosol	10.39	3.33
TraesCSU01G095100.1	Wheat	cytosol	10.39	3.32
GSMUA_Achr5P00970_001	Banana	cytosol	3.9	2.34
GSMUA_Achr8P07770_001	Banana	cytosol, unclear	3.9	2.34
GSMUA_Achr8P32920_001	Banana	cytosol	3.9	2.34
GSMUA_Achr11P...	Banana	cytosol	3.9	2.34
OQU90737	Sorghum	cytosol	3.9	1.71
KRH38035	Soybean	cytosol	2.6	1.54
TraesCS3B01G061600.1	Wheat	cytosol	3.9	1.21
GSMUA_Achr7P26310_001	Banana	cytosol	1.3	0.64
TraesCS7A01G105500.1	Wheat	cytosol	0.0	0.0
TraesCSU01G094900.1	Wheat	cytosol	0.0	0.0
GSMUA_Achr10P...	Banana	cytosol, extracellular	0.0	0.0
TraesCSU01G095200.1	Wheat	cytosol	0.0	0.0
TraesCS7A01G105400.1	Wheat	cytosol	0.0	0.0
HORVU6Hr1G020140.6	Barley	cytosol	0.0	0.0
HORVU5Hr1G019600.6	Barley	cytosol	0.0	0.0
GSMUA_Achr5P00760_001	Banana	cytosol	0.0	0.0
GSMUA_Achr4P04260_001	Banana	cytosol	0.0	0.0
GSMUA_Achr3P30150_001	Banana	cytosol	0.0	0.0
GSMUA_Achr11P...	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr9P30160_001	EnsemblPlants:GSMUA_Achr9T30160_001	EnsemblPlantsGene:GSMUA_Achr9G30160_001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000626	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom
PANTHER:PTHR10666	PANTHER:PTHR10666:SF240	PFAM:PF00240	PFscan:PS50053	PRINTS:PR00348	ScanProsite:PS00299
SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI000296558B	UniProt:M0U4S3	MapMan:35.1	:

Description

Ubiquitin-60S ribosomal protein L40 [Source:GMGC_GENE;Acc:GSMUA_Achr9G30160_001]

Coordinates

chr9:+:33541209..33541669

Molecular Weight (calculated)

8681.5 Da

IEP (calculated)

9.114

GRAVY (calculated)

-0.497

Length

77 amino acids

Sequence
(BLAST)

1: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGR

Best Arabidopsis Sequence Match ( AT1G23410.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHTHKKVKL
101: AVLQFYKVDG SGKVQRLKKE CPSVSCGPGT FMASHFDRHY CGKCGTTYVF KKADEE

Arabidopsis Description

RPS27AAUbiquitin-40S ribosomal protein S27a-1 [Source:UniProtKB/Swiss-Prot;Acc:P59271]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.