Factsheet for PGSC0003DMT400033485

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
extracellular 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P30160_001	Banana	cytosol	14.01	37.66
Solyc03g005610.2.1	Tomato	cytosol	62.8	32.34
KRH38035	Soybean	cytosol	15.94	25.38
PGSC0003DMT400029234	Potato	cytosol	17.87	24.03
TraesCS7B01G004300.1	Wheat	cytosol	24.15	22.94
PGSC0003DMT400057275	Potato	cytosol	20.77	22.63
TraesCS7A01G105500.1	Wheat	cytosol	14.01	21.17
PGSC0003DMT400000364	Potato	cytosol	12.56	20.31
PGSC0003DMT400047686	Potato	cytosol	12.56	20.31
PGSC0003DMT400031900	Potato	cytosol	12.56	20.31
PGSC0003DMT400013958	Potato	cytosol	12.56	20.31
PGSC0003DMT400015022	Potato	cytosol	12.08	19.08
TraesCS7A01G105400.1	Wheat	cytosol	13.04	18.62
HORVU5Hr1G019600.6	Barley	cytosol	16.43	18.09
PGSC0003DMT400027156	Potato	cytosol	32.37	17.59
TraesCSU01G094900.1	Wheat	cytosol	12.56	17.45
PGSC0003DMT400011939	Potato	cytosol	12.56	16.67
PGSC0003DMT400037401	Potato	cytosol	29.95	16.19
PGSC0003DMT400013321	Potato	cytosol	12.08	16.03
HORVU6Hr1G020140.6	Barley	cytosol	14.49	15.62
TraesCSU01G095200.1	Wheat	cytosol	10.63	15.38
PGSC0003DMT400011737	Potato	cytosol	13.04	14.92
PGSC0003DMT400089149	Potato	cytosol	32.37	14.66
OQU90737	Sorghum	cytosol	12.08	14.29
TraesCSU01G095100.1	Wheat	cytosol	14.49	12.45
TraesCS3B01G061600.1	Wheat	cytosol	14.49	12.1
TraesCS7D01G100100.1	Wheat	cytosol	13.53	11.67
HORVU5Hr1G094230.2	Barley	cytosol	23.19	7.02
PGSC0003DMT400037403	Potato	cytosol	17.39	6.75
PGSC0003DMT400010171	Potato	cytosol	17.39	6.74

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626
UniProt:M1AZ88	PFAM:PF00240	EnsemblPlantsGene:PGSC0003DMG400012863	PGSC:PGSC0003DMG400012863	EnsemblPlants:PGSC0003DMT400033485	PRINTS:PR00348
PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF231	SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI000296D83D
InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	:	:	:

Description

Ubiquitin [Source:PGSC_GENE;Acc:PGSC0003DMG400012863]

Coordinates

chr12:+:9368249..9370259

Molecular Weight (calculated)

23426.8 Da

IEP (calculated)

9.074

GRAVY (calculated)

-0.038

Length

207 amino acids

Sequence
(BLAST)

001: MSNVGLGSKQ FSLIHDGKFL EDDKTLAFYK INGGSTLHMV SIPRDKLLIS VVMPTEEIVK IEVKVALPVC DIKTITENRV GYSINSMDLF LGKQKLEDSK
101: ILYQCDINEE SVLKVKSKTI QILIKTIGGS ITLDVHRHEL VKDVKGMLLH KLNIPVHLQK LVFEGKNLAD SRDLASYNIR MHSNIIFDFR SSVSTYIMSY
201: QQHCGFK

Best Arabidopsis Sequence Match ( AT4G02890.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGF

Arabidopsis Description

UBQ14Polyubiquitin 14 [Source:UniProtKB/Swiss-Prot;Acc:Q3E7T8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.