Factsheet for PGSC0003DMT400027156

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G164600.1	Wheat	cytosol	59.84	99.56
TraesCS2D01G405500.1	Wheat	cytosol	58.79	98.25
TraesCS2A01G408200.1	Wheat	cytosol	41.47	96.93
TraesCS6A01G087100.1	Wheat	cytosol	58.01	96.51
PGSC0003DMT400057275	Potato	cytosol	42.78	85.79
PGSC0003DMT400029234	Potato	cytosol	32.55	80.52
KXG29523	Sorghum	cytosol	79.79	79.79
PGSC0003DMT400037401	Potato	cytosol	72.44	72.06
AT1G65350.1	Thale cress	cytosol	58.79	70.22
HORVU5Hr1G019590.12	Barley	extracellular	60.1	69.6
PGSC0003DMT400000364	Potato	cytosol	23.1	68.75
PGSC0003DMT400013958	Potato	cytosol	23.1	68.75
PGSC0003DMT400031900	Potato	cytosol	23.1	68.75
PGSC0003DMT400047686	Potato	cytosol	23.1	68.75
PGSC0003DMT400015022	Potato	cytosol	23.62	68.7
VIT_19s0177g00070.t01	Wine grape	cytosol	79.79	66.52
Solyc07g064130.1.1	Tomato	nucleus	79.79	66.52
PGSC0003DMT400089149	Potato	cytosol	79.79	66.52
EES05681	Sorghum	cytosol	79.79	66.23
Os02t0161900-01	Rice	extracellular, vacuole	79.79	62.81
PGSC0003DMT400011939	Potato	cytosol	25.2	61.54
PGSC0003DMT400013321	Potato	cytosol	24.67	60.26
PGSC0003DMT400011737	Potato	cytosol	24.93	52.49
KRH50099	Soybean	cytosol, endoplasmic reticulum, nucleus	68.77	49.16
KRH20401	Soybean	cytosol	68.77	49.16
Zm00001d015327_P001	Maize	cytosol	59.06	42.21
KRH20404	Soybean	cytosol	48.82	40.7
PGSC0003DMT400033485	Potato	cytosol	17.59	32.37
PGSC0003DMT400037403	Potato	cytosol	37.8	27.02
PGSC0003DMT400010171	Potato	cytosol	32.81	23.41

Protein Annotations

MapMan:19.2.2.1.1	Gene3D:3.10.20.90	ProteinID:AAA96951	ProteinID:AAA96951.1	ProteinID:ADO17492	ProteinID:ADO17492.1
ProteinID:CAA77737	ProteinID:CAA77737.1	ProteinID:CAA77738	ProteinID:CAA77738.1	ProteinID:CAA77739	ProteinID:CAA77739.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EMBL:HM439286	InterPro:IPR000626	UniProt:M1APA4
PFAM:PF00240	EnsemblPlantsGene:PGSC0003DMG400010476	PGSC:PGSC0003DMG400010476	EnsemblPlants:PGSC0003DMT400027156	PRINTS:PR00348	ScanProsite:PS00299
PFscan:PS50053	PANTHER:PTHR45095	PANTHER:PTHR45095:SF2	SMART:SM00213	SUPFAM:SSF54236	EMBL:U26831
UniParc:UPI00000A79D5	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	EMBL:Z11671
EMBL:Z11672	EMBL:Z11673	:	:	:	:

Description

Polyubiquitin [Source:PGSC_GENE;Acc:PGSC0003DMG400010476]

Coordinates

chr10:+:54963244..54966279

Molecular Weight (calculated)

42701.6 Da

IEP (calculated)

7.853

GRAVY (calculated)

-0.436

Length

381 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG F

Best Arabidopsis Sequence Match ( AT4G05320.1 )
(BLAST)

Arabidopsis Description

UBQ10Polyubiquitin 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8H159]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.