Factsheet for PGSC0003DMT400037401

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39163	Canola	cytosol	23.76	90.1
TraesCS7D01G443100.1	Wheat	cytosol	51.7	86.46
TraesCS2A01G408500.1	Wheat	cytosol	50.65	84.72
TraesCS6D01G248600.1	Wheat	cytosol	32.64	81.17
TraesCS7B01G366700.1	Wheat	cytosol	32.38	81.05
KRH02499	Soybean	cytosol	79.11	79.53
TraesCS7B01G366600.1	Wheat	cytosol	32.38	79.49
PGSC0003DMT400027156	Potato	cytosol	72.06	72.44
PGSC0003DMT400029234	Potato	cytosol	28.72	71.43
TraesCS7B01G354000.2	Wheat	cytosol	56.66	70.23
PGSC0003DMT400057275	Potato	cytosol	34.2	68.95
TraesCS6D01G125600.1	Wheat	cytosol	59.27	68.79
PGSC0003DMT400031900	Potato	cytosol	22.72	67.97
PGSC0003DMT400047686	Potato	cytosol	22.72	67.97
PGSC0003DMT400013958	Potato	cytosol	22.72	67.97
PGSC0003DMT400000364	Potato	cytosol	22.72	67.97
PGSC0003DMT400015022	Potato	cytosol	23.24	67.94
PGSC0003DMT400089149	Potato	cytosol	79.11	66.3
PGSC0003DMT400011939	Potato	cytosol	24.8	60.9
PGSC0003DMT400013321	Potato	cytosol	24.28	59.62
HORVU7Hr1G103330.1	Barley	cytosol	55.35	53.94
PGSC0003DMT400011737	Potato	cytosol	24.54	51.93
Solyc11g005670.1.1	Tomato	cytosol, nucleus	69.71	50.0
Os04t0628100-01	Rice	plasma membrane	50.65	49.49
KXG29531	Sorghum	cytosol	49.87	41.79
TraesCS6B01G293300.1	Wheat	plastid	32.38	40.66
PGSC0003DMT400033485	Potato	cytosol	16.19	29.95
PGSC0003DMT400010171	Potato	cytosol	39.95	28.65
PGSC0003DMT400037403	Potato	cytosol	30.29	21.76

Protein Annotations

MapMan:19.2.2.1.1	Gene3D:3.10.20.90	ProteinID:AAA96951	ProteinID:AAA96951.1	ProteinID:ADO17492	ProteinID:ADO17492.1
ProteinID:CAA77737	ProteinID:CAA77737.1	ProteinID:CAA77738	ProteinID:CAA77738.1	ProteinID:CAA77739	ProteinID:CAA77739.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EMBL:HM439286	InterPro:IPR000626	UniProt:M1B5C1
PFAM:PF00240	EnsemblPlantsGene:PGSC0003DMG400014430	PGSC:PGSC0003DMG400014430	EnsemblPlants:PGSC0003DMT400037401	PRINTS:PR00348	ScanProsite:PS00299
PFscan:PS50053	PANTHER:PTHR45095	PANTHER:PTHR45095:SF2	SMART:SM00213	SUPFAM:SSF54236	EMBL:U26831
UniParc:UPI000295F6F3	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	EMBL:Z11671
EMBL:Z11672	EMBL:Z11673	:	:	:	:

Description

Polyubiquitin [Source:PGSC_GENE;Acc:PGSC0003DMG400014430]

Coordinates

chr10:-:1380629..1382025

Molecular Weight (calculated)

42947.0 Da

IEP (calculated)

7.853

GRAVY (calculated)

-0.439

Length

383 amino acids

Sequence
(BLAST)

001: MQMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT
101: IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA
201: GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQVFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV
301: LRLRGGMQIF VKTLTGKTIT LEVESSDTID NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGF

Best Arabidopsis Sequence Match ( AT4G05320.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG F

Arabidopsis Description

UBQ10Polyubiquitin 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8H159]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.