Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc01g056940.2.1 | Tomato | nucleus | 99.36 | 99.36 |
PGSC0003DMT400011939 | Potato | cytosol | 98.72 | 98.72 |
VIT_17s0119g00050.t01 | Wine grape | cytosol | 98.08 | 98.08 |
GSMUA_Achr8P22260_001 | Banana | cytosol | 96.79 | 96.18 |
GSMUA_Achr3P08430_001 | Banana | cytosol | 96.79 | 96.18 |
KRH11776 | Soybean | nucleus | 95.51 | 96.13 |
KRH69588 | Soybean | nucleus | 94.87 | 95.48 |
KRH74571 | Soybean | cytosol | 94.87 | 95.48 |
GSMUA_AchrUn_... | Banana | cytosol | 95.51 | 94.9 |
KRH36782 | Soybean | nucleus | 94.23 | 94.84 |
TraesCS1A01G397400.1 | Wheat | cytosol | 94.23 | 94.84 |
TraesCS1B01G425700.1 | Wheat | cytosol | 94.23 | 94.84 |
TraesCS1D01G405400.1 | Wheat | cytosol | 94.23 | 94.84 |
CDY50916 | Canola | cytosol | 94.87 | 94.27 |
CDX83344 | Canola | cytosol | 94.87 | 94.27 |
TraesCS1A01G105400.1 | Wheat | cytosol | 93.59 | 94.19 |
Os05t0160200-01 | Rice | nucleus | 93.59 | 94.19 |
Os01t0328400-01 | Rice | nucleus | 93.59 | 94.19 |
EES02888 | Sorghum | cytosol | 93.59 | 94.19 |
EES17768 | Sorghum | cytosol | 93.59 | 94.19 |
TraesCS1A01G397500.1 | Wheat | golgi, unclear | 93.59 | 94.19 |
TraesCS1B01G130900.1 | Wheat | cytosol | 93.59 | 94.19 |
TraesCS1D01G109800.1 | Wheat | cytosol | 93.59 | 94.19 |
AT2G47110.1 | Thale cress | cytosol | 94.23 | 93.63 |
CDY25100 | Canola | cytosol | 94.23 | 93.63 |
CDY66301 | Canola | cytosol | 94.23 | 93.63 |
CDY11410 | Canola | cytosol | 94.23 | 93.63 |
CDX93983 | Canola | cytosol | 94.23 | 93.63 |
CDX76623 | Canola | cytosol | 94.23 | 93.63 |
CDX67885 | Canola | cytosol | 94.23 | 93.63 |
AT3G62250.1 | Thale cress | cytosol | 93.59 | 92.99 |
CDY12472 | Canola | cytosol | 90.38 | 90.38 |
CDY25783 | Canola | cytosol | 90.38 | 90.38 |
CDY44146 | Canola | cytosol | 90.38 | 90.38 |
AT1G23410.1 | Thale cress | cytosol | 89.74 | 89.74 |
CDY04715 | Canola | cytosol | 89.74 | 89.74 |
HORVU1Hr1G023660.1 | Barley | extracellular | 93.59 | 81.56 |
PGSC0003DMT400011737 | Potato | cytosol | 92.31 | 79.56 |
PGSC0003DMT400013958 | Potato | cytosol | 53.85 | 65.62 |
PGSC0003DMT400031900 | Potato | cytosol | 53.85 | 65.62 |
PGSC0003DMT400000364 | Potato | cytosol | 53.85 | 65.62 |
PGSC0003DMT400047686 | Potato | cytosol | 53.85 | 65.62 |
PGSC0003DMT400015022 | Potato | cytosol | 53.85 | 64.12 |
PGSC0003DMT400029234 | Potato | cytosol | 55.13 | 55.84 |
Zm00001d032616_P001 | Maize | plastid | 53.85 | 53.85 |
PGSC0003DMT400057275 | Potato | cytosol | 53.21 | 43.68 |
HORVU1Hr1G087690.8 | Barley | nucleus | 73.72 | 42.91 |
PGSC0003DMT400027156 | Potato | cytosol | 60.26 | 24.67 |
PGSC0003DMT400037401 | Potato | cytosol | 59.62 | 24.28 |
PGSC0003DMT400089149 | Potato | cytosol | 60.26 | 20.57 |
PGSC0003DMT400010171 | Potato | cytosol | 55.13 | 16.1 |
PGSC0003DMT400037403 | Potato | cytosol | 53.85 | 15.76 |
PGSC0003DMT400033485 | Potato | cytosol | 16.03 | 12.08 |
Protein Annotations
MapMan:17.1.3.1.29 | Gene3D:2.20.25.660 | Gene3D:3.10.20.90 | ProteinID:AAA19247 | ProteinID:AAA19247.1 | ProteinID:ABY21245 |
ProteinID:ABY21245.1 | ProteinID:ADO17492 | ProteinID:ADO17492.1 | ProteinID:CAA77735 | ProteinID:CAA77735.1 | ProteinID:CAA77737 |
ProteinID:CAA77737.1 | ProteinID:CAA77738 | ProteinID:CAA77738.1 | EMBL:EU294350 | GO:GO:0003674 | GO:GO:0003735 |
GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | GO:GO:0046872 | EMBL:HM439286 |
InterPro:IPR000626 | InterPro:IPR038582 | EMBL:L22576 | UniProt:P62981 | PFAM:PF00240 | PFAM:PF01599 |
EnsemblPlantsGene:PGSC0003DMG400005199 | PGSC:PGSC0003DMG400005199 | EnsemblPlants:PGSC0003DMT400013321 | PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 |
PANTHER:PTHR10666 | PANTHER:PTHR10666:SF257 | InterPro:Ribosomal_S27a | InterPro:Ribosomal_zn-bd | InterPro:S27a-like_sf | SMART:SM00213 |
SMART:SM01402 | SUPFAM:SSF54236 | SUPFAM:SSF57829 | UniParc:UPI000016DE25 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf |
InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | EMBL:Z11669 | EMBL:Z11671 | EMBL:Z11672 | SEG:seg |
Description
UBI3Ubiquitin-40S ribosomal protein S27a [Source:UniProtKB/Swiss-Prot;Acc:P62981]
Coordinates
chr1:-:63211724..63212425
Molecular Weight (calculated)
17702.6 Da
IEP (calculated)
10.438
GRAVY (calculated)
-0.758
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKKKKVKL
101: AVLQFYKVDD TGKVQRLRKE CPNAECGAGT FMANHFDRHY CGKCGLTYVY NKAGGD
101: AVLQFYKVDD TGKVQRLRKE CPNAECGAGT FMANHFDRHY CGKCGLTYVY NKAGGD
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE
Arabidopsis Description
RPS27ABUBQ6 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.