Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G47110.1 | Thale cress | cytosol | 91.67 | 91.08 |
| AT3G62250.1 | Thale cress | cytosol | 91.67 | 91.08 |
| KRH11776 | Soybean | nucleus | 90.38 | 90.97 |
| KRH69588 | Soybean | nucleus | 90.38 | 90.97 |
| KRH74571 | Soybean | cytosol | 90.38 | 90.97 |
| VIT_17s0119g00050.t01 | Wine grape | cytosol | 90.38 | 90.38 |
| Solyc12g098940.1.1 | Tomato | cytosol, nucleus | 90.38 | 90.38 |
| PGSC0003DMT400011939 | Potato | cytosol | 90.38 | 90.38 |
| Os05t0160200-01 | Rice | nucleus | 89.74 | 90.32 |
| PGSC0003DMT400013321 | Potato | cytosol | 89.74 | 89.74 |
| VIT_08s0032g00900.t01 | Wine grape | cytosol | 89.74 | 89.74 |
| TraesCS1D01G405400.1 | Wheat | cytosol | 89.1 | 89.68 |
| TraesCS1A01G397400.1 | Wheat | cytosol | 89.1 | 89.68 |
| KRH36782 | Soybean | nucleus | 89.1 | 89.68 |
| EES17768 | Sorghum | cytosol | 89.1 | 89.68 |
| TraesCS1A01G397500.1 | Wheat | golgi, unclear | 89.1 | 89.68 |
| TraesCS1B01G130900.1 | Wheat | cytosol | 89.1 | 89.68 |
| TraesCS1B01G425700.1 | Wheat | cytosol | 89.1 | 89.68 |
| TraesCS1D01G109800.1 | Wheat | cytosol | 89.1 | 89.68 |
| TraesCS1A01G105400.1 | Wheat | cytosol | 89.1 | 89.68 |
| GSMUA_Achr3P08430_001 | Banana | cytosol | 89.74 | 89.17 |
| GSMUA_Achr8P22260_001 | Banana | cytosol | 89.74 | 89.17 |
| Solyc01g056940.2.1 | Tomato | nucleus | 89.1 | 89.1 |
| EES02888 | Sorghum | cytosol | 88.46 | 89.03 |
| Os01t0328400-01 | Rice | nucleus | 88.46 | 89.03 |
| GSMUA_AchrUn_... | Banana | cytosol | 88.46 | 87.9 |
| HORVU1Hr1G023660.1 | Barley | extracellular | 89.1 | 77.65 |
| VIT_07s0005g02160.t01 | Wine grape | cytosol, plastid | 91.03 | 75.94 |
| PGSC0003DMT400011737 | Potato | cytosol | 87.18 | 75.14 |
| Solyc12g099030.1.1 | Tomato | plastid | 90.38 | 74.21 |
| AT3G52590.1 | Thale cress | cytosol | 53.21 | 64.84 |
| AT2G36170.1 | Thale cress | cytosol | 53.21 | 64.84 |
| AT2G35635.1 | Thale cress | cytosol | 55.13 | 55.84 |
| AT1G31340.1 | Thale cress | cytosol | 55.13 | 55.13 |
| Zm00001d032616_P001 | Maize | plastid | 51.92 | 51.92 |
| HORVU1Hr1G087690.8 | Barley | nucleus | 72.44 | 42.16 |
| AT1G55060.1 | Thale cress | cytosol | 53.21 | 36.09 |
| AT4G02890.3 | Thale cress | cytosol | 59.62 | 30.49 |
| AT1G65350.1 | Thale cress | cytosol | 59.62 | 29.15 |
| AT5G37640.1 | Thale cress | cytosol | 57.05 | 27.64 |
| AT5G03240.3 | Thale cress | cytosol | 53.85 | 27.45 |
| AT5G20620.1 | Thale cress | cytosol | 56.41 | 23.04 |
| AT4G05320.2 | Thale cress | cytosol | 59.62 | 20.35 |
| AT3G09790.2 | Thale cress | cytosol | 51.28 | 12.68 |
| AT4G05050.2 | Thale cress | cytosol | 10.9 | 7.42 |
Protein Annotations
| MapMan:17.1.3.1.29 | Gene3D:2.20.25.660 | Gene3D:3.10.20.90 | EntrezGene:838949 | UniProt:A0A178WHK4 | ProteinID:AAF79581.1 |
| ProteinID:AAF87001.1 | ProteinID:AEE30384.1 | ArrayExpress:AT1G23410 | EnsemblPlantsGene:AT1G23410 | RefSeq:AT1G23410 | TAIR:AT1G23410 |
| RefSeq:AT1G23410-TAIR-G | EnsemblPlants:AT1G23410.1 | TAIR:AT1G23410.1 | EMBL:AY085389 | EMBL:BT024763 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0005886 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 | GO:GO:0046872 |
| InterPro:IPR000626 | InterPro:IPR038582 | RefSeq:NP_173755.1 | ProteinID:OAP17584.1 | UniProt:P59271 | PFAM:PF00240 |
| PFAM:PF01599 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000282 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 |
| PANTHER:PTHR10666 | PANTHER:PTHR10666:SF236 | InterPro:Ribosomal_S27a | InterPro:Ribosomal_zn-bd | InterPro:S27a-like_sf | SMART:SM00213 |
| SMART:SM01402 | SUPFAM:SSF54236 | SUPFAM:SSF57829 | UniParc:UPI0000162E99 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf |
| InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | SEG:seg | : | : | : |
Description
RPS27AAUbiquitin-40S ribosomal protein S27a-1 [Source:UniProtKB/Swiss-Prot;Acc:P59271]
Coordinates
chr1:+:8314853..8315737
Molecular Weight (calculated)
17672.6 Da
IEP (calculated)
10.418
GRAVY (calculated)
-0.709
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHTHKKVKL
101: AVLQFYKVDG SGKVQRLKKE CPSVSCGPGT FMASHFDRHY CGKCGTTYVF KKADEE
101: AVLQFYKVDG SGKVQRLKKE CPSVSCGPGT FMASHFDRHY CGKCGTTYVF KKADEE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.