Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
26928395
|
msms PMID:
26928395
doi
Agricultural and Environmental Proteomics, Department of Systems Biology, Technical University of Denmark , Søltofts Plads, Building 224, DK-2800 Kgs. Lyngby, Denmark., Enzyme and Protein Chemistry, Department of Systems Biology, Technical University of Denmark , Elektrovej, Building 375, DK-2800 Kgs. Lyngby, Denmark.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G018030.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G23410.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
| AT2G47110.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
| AT3G62250.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G109800.1 | Wheat | cytosol | 86.59 | 100.0 |
| TraesCS1B01G130900.1 | Wheat | cytosol | 86.59 | 100.0 |
| Os01t0328400-01 | Rice | nucleus | 85.47 | 98.71 |
| HORVU4Hr1G040980.1 | Barley | cytosol | 27.37 | 98.0 |
| EES02888 | Sorghum | cytosol | 84.36 | 97.42 |
| GSMUA_Achr8P22260_001 | Banana | cytosol | 83.8 | 95.54 |
| GSMUA_Achr3P08430_001 | Banana | cytosol | 83.8 | 95.54 |
| KRH11776 | Soybean | nucleus | 82.12 | 94.84 |
| GSMUA_AchrUn_... | Banana | cytosol | 82.68 | 94.27 |
| PGSC0003DMT400011939 | Potato | cytosol | 82.12 | 94.23 |
| Solyc12g098940.1.1 | Tomato | cytosol, nucleus | 82.12 | 94.23 |
| KRH74571 | Soybean | cytosol | 81.56 | 94.19 |
| KRH69588 | Soybean | nucleus | 81.56 | 94.19 |
| PGSC0003DMT400013321 | Potato | cytosol | 81.56 | 93.59 |
| VIT_08s0032g00900.t01 | Wine grape | cytosol | 81.56 | 93.59 |
| VIT_17s0119g00050.t01 | Wine grape | cytosol | 81.56 | 93.59 |
| KRH36782 | Soybean | nucleus | 81.01 | 93.55 |
| Solyc01g056940.2.1 | Tomato | nucleus | 81.01 | 92.95 |
| AT2G47110.1 | Thale cress | cytosol | 81.01 | 92.36 |
| CDY50916 | Canola | cytosol | 81.01 | 92.36 |
| CDY11410 | Canola | cytosol | 81.01 | 92.36 |
| CDX93983 | Canola | cytosol | 81.01 | 92.36 |
| CDX83344 | Canola | cytosol | 81.01 | 92.36 |
| CDX76623 | Canola | cytosol | 81.01 | 92.36 |
| CDX67885 | Canola | cytosol | 81.01 | 92.36 |
| CDY25100 | Canola | cytosol | 81.01 | 92.36 |
| CDY66301 | Canola | cytosol | 81.01 | 92.36 |
| AT3G62250.1 | Thale cress | cytosol | 80.45 | 91.72 |
| CDY25783 | Canola | cytosol | 78.21 | 89.74 |
| CDY44146 | Canola | cytosol | 78.21 | 89.74 |
| CDY12472 | Canola | cytosol | 78.21 | 89.74 |
| AT1G23410.1 | Thale cress | cytosol | 77.65 | 89.1 |
| CDY04715 | Canola | cytosol | 77.65 | 89.1 |
| VIT_07s0005g02160.t01 | Wine grape | cytosol, plastid | 83.8 | 80.21 |
| Solyc12g099030.1.1 | Tomato | plastid | 83.24 | 78.42 |
| PGSC0003DMT400011737 | Potato | cytosol | 78.21 | 77.35 |
| HORVU4Hr1G001170.5 | Barley | cytosol | 44.69 | 72.73 |
| HORVU4Hr1G065100.3 | Barley | cytosol | 44.13 | 70.54 |
| HORVU7Hr1G109650.2 | Barley | cytosol | 46.93 | 60.0 |
| HORVU7Hr1G113500.1 | Barley | cytosol, extracellular | 48.04 | 56.21 |
| HORVU4Hr1G061980.1 | Barley | cytosol | 37.43 | 55.83 |
| HORVU5Hr1G072680.1 | Barley | cytosol | 45.25 | 53.64 |
| HORVU7Hr1G103160.4 | Barley | cytosol | 50.28 | 49.72 |
| HORVU7Hr1G029150.2 | Barley | cytosol | 49.16 | 48.35 |
| HORVU2Hr1G104410.26 | Barley | cytosol | 47.49 | 48.02 |
| HORVU7Hr1G029100.1 | Barley | cytosol | 50.28 | 47.12 |
| HORVU6Hr1G014910.1 | Barley | cytosol | 43.02 | 46.95 |
| HORVU7Hr1G029070.1 | Barley | cytosol | 48.04 | 45.74 |
| HORVU1Hr1G087690.8 | Barley | nucleus | 65.36 | 43.66 |
| HORVU5Hr1G065170.1 | Barley | cytosol | 48.04 | 43.65 |
| HORVU4Hr1G061900.2 | Barley | nucleus, plastid | 46.37 | 43.46 |
| HORVU7Hr1G103550.4 | Barley | cytosol | 53.63 | 41.92 |
| HORVU3Hr1G014180.3 | Barley | cytosol | 47.49 | 41.87 |
| HORVU3Hr1G014150.2 | Barley | cytosol | 47.49 | 41.87 |
| HORVU5Hr1G056730.1 | Barley | cytosol, plastid | 39.11 | 41.67 |
| HORVU7Hr1G103380.2 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 34.64 | 40.0 |
| HORVU6Hr1G026200.5 | Barley | cytosol | 53.63 | 38.25 |
| HORVU6Hr1G016150.3 | Barley | cytosol | 40.78 | 37.82 |
| HORVU6Hr1G029050.1 | Barley | cytosol | 41.34 | 37.37 |
| HORVU3Hr1G111000.1 | Barley | cytosol | 31.28 | 36.6 |
| HORVU0Hr1G038500.2 | Barley | cytosol | 48.04 | 35.54 |
| HORVU6Hr1G014970.1 | Barley | plastid | 47.49 | 35.42 |
| HORVU1Hr1G043930.8 | Barley | plastid | 77.09 | 32.78 |
| HORVU2Hr1G104440.1 | Barley | cytosol | 48.6 | 31.07 |
| HORVU7Hr1G102840.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 53.63 | 30.19 |
| HORVU5Hr1G019590.12 | Barley | extracellular | 53.63 | 29.18 |
| HORVU6Hr1G021700.4 | Barley | cytosol | 53.63 | 28.4 |
| HORVU3Hr1G110900.1 | Barley | cytosol | 33.52 | 26.67 |
| HORVU7Hr1G103330.1 | Barley | cytosol | 53.63 | 24.43 |
| HORVU5Hr1G019600.6 | Barley | cytosol | 23.46 | 22.34 |
| HORVU3Hr1G110970.1 | Barley | cytosol, nucleus, plastid | 35.2 | 21.5 |
| HORVU6Hr1G026260.1 | Barley | cytosol, extracellular, plasma membrane | 55.31 | 21.24 |
| HORVU6Hr1G020140.6 | Barley | cytosol | 21.79 | 20.31 |
| HORVU7Hr1G103170.9 | Barley | cytosol, plasma membrane | 53.63 | 18.01 |
| HORVU4Hr1G089720.1 | Barley | nucleus | 31.84 | 14.39 |
| HORVU7Hr1G107010.1 | Barley | cytosol | 11.17 | 13.07 |
| HORVU6Hr1G026280.2 | Barley | plastid | 28.49 | 12.59 |
| HORVU5Hr1G094230.2 | Barley | cytosol | 26.82 | 7.02 |
Protein Annotations
| MapMan:17.1.3.1.29 | Gene3D:2.20.25.660 | Gene3D:3.10.20.90 | UniProt:A0A287EXK4 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:HORVU1Hr1G023660 | EnsemblPlants:HORVU1Hr1G023660.1 | InterPro:IPR000626 | InterPro:IPR038582 |
| PFAM:PF00240 | PFAM:PF01599 | PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR10666 |
| PANTHER:PTHR10666:SF235 | InterPro:Ribosomal_S27a | InterPro:Ribosomal_zn-bd | InterPro:S27a-like_sf | SMART:SM00213 | SMART:SM01402 |
| SUPFAM:SSF54236 | SUPFAM:SSF57829 | UniParc:UPI000B47A083 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS |
| InterPro:Ubiquitin_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:104959326..104960686
Molecular Weight (calculated)
20589.1 Da
IEP (calculated)
11.072
GRAVY (calculated)
-0.959
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: PTQTLPRRHR RRRSARRRPR AAAKMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG
101: AKKRKKKTYT KPKKQKHKHK KVKLAVLQFY KVDDATGKVT RLRKECPNAD CGAGTFMANH FDRHYCGKCG LTYVYNQKA
101: AKKRKKKTYT KPKKQKHKHK KVKLAVLQFY KVDDATGKVT RLRKECPNAD CGAGTFMANH FDRHYCGKCG LTYVYNQKA
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHTHKKVKL
101: AVLQFYKVDG SGKVQRLKKE CPSVSCGPGT FMASHFDRHY CGKCGTTYVF KKADEE
101: AVLQFYKVDG SGKVQRLKKE CPSVSCGPGT FMASHFDRHY CGKCGTTYVF KKADEE
Arabidopsis Description
RPS27AAUbiquitin-40S ribosomal protein S27a-1 [Source:UniProtKB/Swiss-Prot;Acc:P59271]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.