Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
26928395
plasma membrane: 29385242 |
msms PMID:
26928395
doi
Agricultural and Environmental Proteomics, Department of Systems Biology, Technical University of Denmark , Søltofts Plads, Building 224, DK-2800 Kgs. Lyngby, Denmark., Enzyme and Protein Chemistry, Department of Systems Biology, Technical University of Denmark , Elektrovej, Building 375, DK-2800 Kgs. Lyngby, Denmark.
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G107010.1 | Barley | cytosol | 32.83 | 100.0 |
| HORVU7Hr1G103550.4 | Barley | cytosol | 49.14 | 100.0 |
| HORVU7Hr1G103160.4 | Barley | cytosol | 38.84 | 100.0 |
| HORVU4Hr1G040980.1 | Barley | cytosol | 10.52 | 98.0 |
| HORVU6Hr1G026200.5 | Barley | cytosol | 49.57 | 92.03 |
| HORVU6Hr1G016150.3 | Barley | cytosol | 37.98 | 91.71 |
| HORVU7Hr1G113500.1 | Barley | cytosol, extracellular | 26.61 | 81.05 |
| HORVU4Hr1G065100.3 | Barley | cytosol | 17.81 | 74.11 |
| HORVU7Hr1G102840.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 50.21 | 73.58 |
| HORVU4Hr1G001170.5 | Barley | cytosol | 17.17 | 72.73 |
| HORVU5Hr1G019590.12 | Barley | extracellular | 50.86 | 72.04 |
| HORVU7Hr1G103170.9 | Barley | cytosol, plasma membrane | 80.26 | 70.17 |
| HORVU6Hr1G021700.4 | Barley | cytosol | 50.0 | 68.93 |
| HORVU7Hr1G103330.1 | Barley | cytosol | 57.51 | 68.19 |
| HORVU7Hr1G029150.2 | Barley | cytosol | 26.39 | 67.58 |
| HORVU5Hr1G065170.1 | Barley | cytosol | 28.54 | 67.51 |
| HORVU7Hr1G029070.1 | Barley | cytosol | 26.39 | 65.43 |
| HORVU7Hr1G029100.1 | Barley | cytosol | 26.61 | 64.92 |
| HORVU3Hr1G014180.3 | Barley | cytosol | 27.47 | 63.05 |
| HORVU3Hr1G014150.2 | Barley | cytosol | 27.47 | 63.05 |
| HORVU7Hr1G109650.2 | Barley | cytosol | 18.88 | 62.86 |
| HORVU0Hr1G038500.2 | Barley | cytosol | 32.62 | 62.81 |
| HORVU5Hr1G072680.1 | Barley | cytosol | 18.67 | 57.62 |
| HORVU5Hr1G019600.6 | Barley | cytosol | 22.75 | 56.38 |
| HORVU6Hr1G014970.1 | Barley | plastid | 28.97 | 56.25 |
| HORVU6Hr1G029050.1 | Barley | cytosol | 23.82 | 56.06 |
| HORVU3Hr1G110900.1 | Barley | cytosol | 26.82 | 55.56 |
| HORVU3Hr1G111000.1 | Barley | cytosol | 18.24 | 55.56 |
| HORVU1Hr1G023660.1 | Barley | extracellular | 21.24 | 55.31 |
| HORVU4Hr1G061980.1 | Barley | cytosol | 14.16 | 55.0 |
| HORVU6Hr1G014910.1 | Barley | cytosol | 17.6 | 50.0 |
| HORVU4Hr1G061900.2 | Barley | nucleus, plastid | 19.96 | 48.69 |
| HORVU3Hr1G110970.1 | Barley | cytosol, nucleus, plastid | 30.04 | 47.78 |
| HORVU2Hr1G104410.26 | Barley | cytosol | 18.03 | 47.46 |
| HORVU6Hr1G020140.6 | Barley | cytosol | 19.53 | 47.4 |
| HORVU5Hr1G056730.1 | Barley | cytosol, plastid | 16.95 | 47.02 |
| HORVU7Hr1G103380.2 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 15.02 | 45.16 |
| HORVU1Hr1G087690.8 | Barley | nucleus | 21.03 | 36.57 |
| HORVU2Hr1G104440.1 | Barley | cytosol | 20.17 | 33.57 |
| HORVU4Hr1G089720.1 | Barley | nucleus | 28.33 | 33.33 |
| HORVU1Hr1G043930.8 | Barley | plastid | 23.39 | 25.89 |
| HORVU6Hr1G026280.2 | Barley | plastid | 22.1 | 25.43 |
| HORVU5Hr1G094230.2 | Barley | cytosol | 28.54 | 19.44 |
Protein Annotations
| MapMan:19.2.2.1.1 | Gene3D:3.10.20.90 | UniProt:A0A287TN05 | EMBL:AK360597 | EMBL:AK372915 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:HORVU6Hr1G026260 | EnsemblPlants:HORVU6Hr1G026260.1 | InterPro:IPR000626 | PFAM:PF00240 |
| PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR45095 | PANTHER:PTHR45095:SF2 | SMART:SM00213 |
| SUPFAM:SSF54236 | UniParc:UPI000B470E65 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom |
Description
No Description!
Coordinates
chrchr6H:-:98102268..98105314
Molecular Weight (calculated)
52850.2 Da
IEP (calculated)
7.855
GRAVY (calculated)
-0.306
Length
466 amino acids
Sequence
(BLAST)
(BLAST)
001: MCLIYYPEAR FLIDNKHVWH LCGIIRSMKS VDFFVIYTQG PMVLHIFNEK ICCCHRSLSM HYYLLFHHCD LLLYAYHPVC NSSLQMQIFV KTLTGKTITL
101: EVESSDTIDN VKAKIQDKEG IPPDQQRLIF AGKQLEDGRT LADYNIQKES TLHLVLRLRG GMQIFVKTLT GKTITLEVES SDTIDNVKAK IQDKEGIPPD
201: QQRLIFAGKQ LEDGRTLADY NIQKESTLHL VLRLRGGMQI FVKTLTGKTI TLEVESSDTI DNVKAKIQDK EGIPPDQQRL IFAGKQLEDG RTLADYNIQK
301: ESTLHLVLRL RGGMQIFVKT LTGKTITLEV ESSDTIDNVK AKIQDKEGIP PDQQRLIFAG KQLEDGRTLA DYNIQKESTL HLVLRLRGGM QIFVKTLTGK
401: TITLEVESSD TIDNVKAKIQ DKEGIPPDQQ RLIFAGKQLE DGRTLADYNI QKESTLHLVL RLRGGQ
101: EVESSDTIDN VKAKIQDKEG IPPDQQRLIF AGKQLEDGRT LADYNIQKES TLHLVLRLRG GMQIFVKTLT GKTITLEVES SDTIDNVKAK IQDKEGIPPD
201: QQRLIFAGKQ LEDGRTLADY NIQKESTLHL VLRLRGGMQI FVKTLTGKTI TLEVESSDTI DNVKAKIQDK EGIPPDQQRL IFAGKQLEDG RTLADYNIQK
301: ESTLHLVLRL RGGMQIFVKT LTGKTITLEV ESSDTIDNVK AKIQDKEGIP PDQQRLIFAG KQLEDGRTLA DYNIQKESTL HLVLRLRGGM QIFVKTLTGK
401: TITLEVESSD TIDNVKAKIQ DKEGIPPDQQ RLIFAGKQLE DGRTLADYNI QKESTLHLVL RLRGGQ
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG SF
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG SF
Arabidopsis Description
UBQ4Polyubiquitin 4 [Source:UniProtKB/Swiss-Prot;Acc:P0CH32]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.