Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G018030.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G23410.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
| AT2G47110.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
| AT3G62250.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G040980.1 | Barley | cytosol | 18.28 | 98.0 |
| TraesCS1D01G405400.1 | Wheat | cytosol | 43.66 | 75.48 |
| TraesCS1A01G105400.1 | Wheat | cytosol | 43.66 | 75.48 |
| TraesCS1A01G397500.1 | Wheat | golgi, unclear | 43.66 | 75.48 |
| TraesCS1B01G425700.1 | Wheat | cytosol | 43.66 | 75.48 |
| AT2G47110.1 | Thale cress | cytosol | 44.03 | 75.16 |
| KRH11776 | Soybean | nucleus | 43.28 | 74.84 |
| Os01t0328400-01 | Rice | nucleus | 43.28 | 74.84 |
| EES02888 | Sorghum | cytosol | 43.28 | 74.84 |
| KRH36782 | Soybean | nucleus | 42.91 | 74.19 |
| KRH69588 | Soybean | nucleus | 42.91 | 74.19 |
| KRH74571 | Soybean | cytosol | 42.91 | 74.19 |
| CDX76623 | Canola | cytosol | 43.28 | 73.89 |
| GSMUA_Achr8P22260_001 | Banana | cytosol | 43.28 | 73.89 |
| GSMUA_Achr3P08430_001 | Banana | cytosol | 43.28 | 73.89 |
| CDY66301 | Canola | cytosol | 43.28 | 73.89 |
| CDY25100 | Canola | cytosol | 43.28 | 73.89 |
| CDX67885 | Canola | cytosol | 43.28 | 73.89 |
| CDY11410 | Canola | cytosol | 43.28 | 73.89 |
| CDX93983 | Canola | cytosol | 43.28 | 73.89 |
| PGSC0003DMT400011939 | Potato | cytosol | 42.91 | 73.72 |
| PGSC0003DMT400013321 | Potato | cytosol | 42.91 | 73.72 |
| Solyc12g098940.1.1 | Tomato | cytosol, nucleus | 42.91 | 73.72 |
| VIT_17s0119g00050.t01 | Wine grape | cytosol | 42.91 | 73.72 |
| CDY50916 | Canola | cytosol | 42.91 | 73.25 |
| CDX83344 | Canola | cytosol | 42.91 | 73.25 |
| VIT_08s0032g00900.t01 | Wine grape | cytosol | 42.54 | 73.08 |
| CDY44146 | Canola | cytosol | 42.54 | 73.08 |
| CDY04715 | Canola | cytosol | 42.54 | 73.08 |
| Solyc01g056940.2.1 | Tomato | nucleus | 42.54 | 73.08 |
| CDY25783 | Canola | cytosol | 42.54 | 73.08 |
| CDY12472 | Canola | cytosol | 42.54 | 73.08 |
| GSMUA_AchrUn_... | Banana | cytosol | 42.54 | 72.61 |
| AT3G62250.1 | Thale cress | cytosol | 42.54 | 72.61 |
| AT1G23410.1 | Thale cress | cytosol | 42.16 | 72.44 |
| HORVU4Hr1G001170.5 | Barley | cytosol | 29.1 | 70.91 |
| HORVU4Hr1G065100.3 | Barley | cytosol | 29.48 | 70.54 |
| HORVU1Hr1G023660.1 | Barley | extracellular | 43.66 | 65.36 |
| PGSC0003DMT400011737 | Potato | cytosol | 43.28 | 64.09 |
| VIT_07s0005g02160.t01 | Wine grape | cytosol, plastid | 42.91 | 61.5 |
| Solyc12g099030.1.1 | Tomato | plastid | 42.91 | 60.53 |
| HORVU7Hr1G109650.2 | Barley | cytosol | 31.34 | 60.0 |
| HORVU7Hr1G113500.1 | Barley | cytosol, extracellular | 31.72 | 55.56 |
| HORVU4Hr1G061980.1 | Barley | cytosol | 24.25 | 54.17 |
| HORVU5Hr1G072680.1 | Barley | cytosol | 29.85 | 52.98 |
| HORVU6Hr1G014910.1 | Barley | cytosol | 29.48 | 48.17 |
| HORVU2Hr1G104410.26 | Barley | cytosol | 31.34 | 47.46 |
| HORVU7Hr1G103160.4 | Barley | cytosol | 31.34 | 46.41 |
| HORVU7Hr1G029150.2 | Barley | cytosol | 31.34 | 46.15 |
| HORVU7Hr1G029070.1 | Barley | cytosol | 30.97 | 44.15 |
| HORVU7Hr1G029100.1 | Barley | cytosol | 31.34 | 43.98 |
| HORVU5Hr1G065170.1 | Barley | cytosol | 31.72 | 43.15 |
| HORVU7Hr1G103550.4 | Barley | cytosol | 36.57 | 42.79 |
| HORVU4Hr1G061900.2 | Barley | nucleus, plastid | 29.85 | 41.88 |
| HORVU3Hr1G014180.3 | Barley | cytosol | 31.34 | 41.38 |
| HORVU3Hr1G014150.2 | Barley | cytosol | 31.34 | 41.38 |
| HORVU5Hr1G056730.1 | Barley | cytosol, plastid | 25.37 | 40.48 |
| HORVU0Hr1G038500.2 | Barley | cytosol | 36.19 | 40.08 |
| HORVU7Hr1G103380.2 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 23.13 | 40.0 |
| HORVU6Hr1G026200.5 | Barley | cytosol | 36.57 | 39.04 |
| HORVU6Hr1G029050.1 | Barley | cytosol | 26.87 | 36.36 |
| HORVU6Hr1G016150.3 | Barley | cytosol | 25.75 | 35.75 |
| HORVU3Hr1G111000.1 | Barley | cytosol | 20.15 | 35.29 |
| HORVU6Hr1G014970.1 | Barley | plastid | 30.6 | 34.17 |
| HORVU7Hr1G102840.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 38.43 | 32.39 |
| HORVU2Hr1G104440.1 | Barley | cytosol | 31.72 | 30.36 |
| HORVU6Hr1G021700.4 | Barley | cytosol | 38.06 | 30.18 |
| HORVU5Hr1G019590.12 | Barley | extracellular | 36.57 | 29.79 |
| HORVU1Hr1G043930.8 | Barley | plastid | 41.79 | 26.6 |
| HORVU7Hr1G103330.1 | Barley | cytosol | 34.33 | 23.41 |
| HORVU3Hr1G110900.1 | Barley | cytosol | 19.4 | 23.11 |
| HORVU6Hr1G026260.1 | Barley | cytosol, extracellular, plasma membrane | 36.57 | 21.03 |
| HORVU5Hr1G019600.6 | Barley | cytosol | 13.81 | 19.68 |
| HORVU3Hr1G110970.1 | Barley | cytosol, nucleus, plastid | 19.78 | 18.09 |
| HORVU7Hr1G103170.9 | Barley | cytosol, plasma membrane | 35.45 | 17.82 |
| HORVU6Hr1G020140.6 | Barley | cytosol | 12.69 | 17.71 |
| HORVU4Hr1G089720.1 | Barley | nucleus | 21.27 | 14.39 |
| HORVU7Hr1G107010.1 | Barley | cytosol | 8.21 | 14.38 |
| HORVU6Hr1G026280.2 | Barley | plastid | 16.79 | 11.11 |
| HORVU5Hr1G094230.2 | Barley | cytosol | 20.52 | 8.04 |
Protein Annotations
| MapMan:17.1.3.1.29 | Gene3D:2.20.25.660 | Gene3D:3.10.20.90 | UniProt:A0A287GM38 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | EnsemblPlantsGene:HORVU1Hr1G087690 | EnsemblPlants:HORVU1Hr1G087690.8 | InterPro:IPR000626 | InterPro:IPR038582 | PFAM:PF00240 |
| PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF236 | InterPro:S27a-like_sf |
| SMART:SM00213 | SUPFAM:SSF54236 | UniParc:UPI000B47EB0C | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS |
| InterPro:Ubiquitin_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:539807491..539811309
Molecular Weight (calculated)
30628.4 Da
IEP (calculated)
11.667
GRAVY (calculated)
-1.398
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK QKHKHKKVKL
101: AYTFVSGFLD VPENSEYVAL RRRRHRRRRS ARRRPPHRRQ DADLREDPDG QDHHAGGGVV GHHRQRQGQD PGQGGHPAGP AAPHLRRQAA RGRPHPRRLQ
201: HPEGVHPPPG APPPRWRQEA QEEDVHQTQE AKAQAQEGEA RRPPVLQGRR RHRQGNQAQE GVPQRRKA
101: AYTFVSGFLD VPENSEYVAL RRRRHRRRRS ARRRPPHRRQ DADLREDPDG QDHHAGGGVV GHHRQRQGQD PGQGGHPAGP AAPHLRRQAA RGRPHPRRLQ
201: HPEGVHPPPG APPPRWRQEA QEEDVHQTQE AKAQAQEGEA RRPPVLQGRR RHRQGNQAQE GVPQRRKA
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHTHKKVKL
101: AVLQFYKVDG SGKVQRLKKE CPSVSCGPGT FMASHFDRHY CGKCGTTYVF KKADEE
101: AVLQFYKVDG SGKVQRLKKE CPSVSCGPGT FMASHFDRHY CGKCGTTYVF KKADEE
Arabidopsis Description
RPS27AAUbiquitin-40S ribosomal protein S27a-1 [Source:UniProtKB/Swiss-Prot;Acc:P59271]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.