Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400011939 | Potato | cytosol | 80.11 | 92.95 |
| VIT_17s0119g00050.t01 | Wine grape | cytosol | 79.56 | 92.31 |
| PGSC0003DMT400013321 | Potato | cytosol | 79.56 | 92.31 |
| KRH11776 | Soybean | nucleus | 79.01 | 92.26 |
| Solyc01g056940.2.1 | Tomato | nucleus | 79.01 | 91.67 |
| KRH36782 | Soybean | nucleus | 78.45 | 91.61 |
| KRH69588 | Soybean | nucleus | 78.45 | 91.61 |
| KRH74571 | Soybean | cytosol | 78.45 | 91.61 |
| GSMUA_Achr8P22260_001 | Banana | cytosol | 79.01 | 91.08 |
| GSMUA_Achr3P08430_001 | Banana | cytosol | 79.01 | 91.08 |
| TraesCS1B01G425700.1 | Wheat | cytosol | 77.9 | 90.97 |
| EES02888 | Sorghum | cytosol | 77.9 | 90.97 |
| Os01t0328400-01 | Rice | nucleus | 77.9 | 90.97 |
| TraesCS1D01G405400.1 | Wheat | cytosol | 77.9 | 90.97 |
| TraesCS1A01G397400.1 | Wheat | cytosol | 77.9 | 90.97 |
| Os05t0160200-01 | Rice | nucleus | 77.35 | 90.32 |
| EES17768 | Sorghum | cytosol | 77.35 | 90.32 |
| TraesCS1A01G105400.1 | Wheat | cytosol | 77.35 | 90.32 |
| TraesCS1A01G397500.1 | Wheat | golgi, unclear | 77.35 | 90.32 |
| TraesCS1B01G130900.1 | Wheat | cytosol | 77.35 | 90.32 |
| TraesCS1D01G109800.1 | Wheat | cytosol | 77.35 | 90.32 |
| AT2G47110.1 | Thale cress | cytosol | 77.9 | 89.81 |
| CDY11410 | Canola | cytosol | 77.9 | 89.81 |
| GSMUA_AchrUn_... | Banana | cytosol | 77.9 | 89.81 |
| CDY66301 | Canola | cytosol | 77.9 | 89.81 |
| CDY50916 | Canola | cytosol | 77.9 | 89.81 |
| CDY25100 | Canola | cytosol | 77.9 | 89.81 |
| CDX93983 | Canola | cytosol | 77.9 | 89.81 |
| CDX83344 | Canola | cytosol | 77.9 | 89.81 |
| CDX76623 | Canola | cytosol | 77.9 | 89.81 |
| CDX67885 | Canola | cytosol | 77.9 | 89.81 |
| AT3G62250.1 | Thale cress | cytosol | 77.35 | 89.17 |
| CDY44146 | Canola | cytosol | 76.24 | 88.46 |
| CDY12472 | Canola | cytosol | 76.24 | 88.46 |
| CDY25783 | Canola | cytosol | 76.24 | 88.46 |
| CDY04715 | Canola | cytosol | 75.69 | 87.82 |
| AT1G23410.1 | Thale cress | cytosol | 75.14 | 87.18 |
| HORVU1Hr1G023660.1 | Barley | extracellular | 77.35 | 78.21 |
| PGSC0003DMT400031900 | Potato | cytosol | 46.41 | 65.62 |
| PGSC0003DMT400047686 | Potato | cytosol | 46.41 | 65.62 |
| PGSC0003DMT400013958 | Potato | cytosol | 46.41 | 65.62 |
| PGSC0003DMT400000364 | Potato | cytosol | 46.41 | 65.62 |
| PGSC0003DMT400015022 | Potato | cytosol | 46.41 | 64.12 |
| PGSC0003DMT400029234 | Potato | cytosol | 48.07 | 56.49 |
| Zm00001d032616_P001 | Maize | plastid | 45.86 | 53.21 |
| PGSC0003DMT400057275 | Potato | cytosol | 46.41 | 44.21 |
| HORVU1Hr1G087690.8 | Barley | nucleus | 64.09 | 43.28 |
| PGSC0003DMT400027156 | Potato | cytosol | 52.49 | 24.93 |
| PGSC0003DMT400037401 | Potato | cytosol | 51.93 | 24.54 |
| PGSC0003DMT400089149 | Potato | cytosol | 52.49 | 20.79 |
| PGSC0003DMT400010171 | Potato | cytosol | 48.07 | 16.29 |
| PGSC0003DMT400037403 | Potato | cytosol | 46.96 | 15.95 |
| PGSC0003DMT400033485 | Potato | cytosol | 14.92 | 13.04 |
Protein Annotations
| EntrezGene:102590530 | MapMan:17.1.3.1.29 | Gene3D:2.20.25.660 | Gene3D:3.10.20.90 | ProteinID:ADO17492 | ProteinID:ADO17492.1 |
| ProteinID:CAA77737 | ProteinID:CAA77737.1 | ProteinID:CAA77738 | ProteinID:CAA77738.1 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 | EMBL:HM439286 | InterPro:IPR000626 |
| InterPro:IPR038582 | UniProt:M1A024 | PFAM:PF00240 | PFAM:PF01599 | EnsemblPlantsGene:PGSC0003DMG400004605 | PGSC:PGSC0003DMG400004605 |
| EnsemblPlants:PGSC0003DMT400011737 | PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF236 |
| InterPro:Ribosomal_S27a | InterPro:Ribosomal_zn-bd | InterPro:S27a-like_sf | SMART:SM00213 | SMART:SM01402 | SUPFAM:SSF54236 |
| SUPFAM:SSF57829 | TMHMM:TMhelix | UniParc:UPI000296FC6E | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS |
| InterPro:Ubiquitin_dom | RefSeq:XP_006349858.1 | EMBL:Z11671 | EMBL:Z11672 | SEG:seg | : |
Description
Ubiquitin extension protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004605]
Coordinates
chr12:+:59820480..59821228
Molecular Weight (calculated)
20935.1 Da
IEP (calculated)
10.565
GRAVY (calculated)
-0.355
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKKKKVKL
101: AVLQFYKVDD SGKVQRLRKE CPNAECGAGT FMANHFDRHY CGKMWGLPMF TRRLVVIREM LVWLLLYLLD FAHICVPILS F
101: AVLQFYKVDD SGKVQRLRKE CPNAECGAGT FMANHFDRHY CGKMWGLPMF TRRLVVIREM LVWLLLYLLD FAHICVPILS F
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE
Arabidopsis Description
RPS27ABUBQ6 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.