Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12472 | Canola | cytosol | 99.36 | 99.36 |
| CDY25783 | Canola | cytosol | 99.36 | 99.36 |
| CDY44146 | Canola | cytosol | 99.36 | 99.36 |
| CDX83344 | Canola | cytosol | 92.95 | 92.36 |
| CDY25100 | Canola | cytosol | 92.95 | 92.36 |
| CDY11410 | Canola | cytosol | 92.95 | 92.36 |
| CDX93983 | Canola | cytosol | 92.95 | 92.36 |
| CDY50916 | Canola | cytosol | 92.95 | 92.36 |
| CDY66301 | Canola | cytosol | 92.95 | 92.36 |
| CDX76623 | Canola | cytosol | 92.95 | 92.36 |
| CDX67885 | Canola | cytosol | 92.95 | 92.36 |
| PGSC0003DMT400011939 | Potato | cytosol | 90.38 | 90.38 |
| Solyc12g098940.1.1 | Tomato | cytosol, nucleus | 90.38 | 90.38 |
| VIT_17s0119g00050.t01 | Wine grape | cytosol | 90.38 | 90.38 |
| Os05t0160200-01 | Rice | nucleus | 89.74 | 90.32 |
| VIT_08s0032g00900.t01 | Wine grape | cytosol | 89.74 | 89.74 |
| PGSC0003DMT400013321 | Potato | cytosol | 89.74 | 89.74 |
| TraesCS1A01G397500.1 | Wheat | golgi, unclear | 89.1 | 89.68 |
| TraesCS1A01G105400.1 | Wheat | cytosol | 89.1 | 89.68 |
| TraesCS1A01G397400.1 | Wheat | cytosol | 89.1 | 89.68 |
| EES17768 | Sorghum | cytosol | 89.1 | 89.68 |
| TraesCS1B01G130900.1 | Wheat | cytosol | 89.1 | 89.68 |
| TraesCS1B01G425700.1 | Wheat | cytosol | 89.1 | 89.68 |
| TraesCS1D01G109800.1 | Wheat | cytosol | 89.1 | 89.68 |
| TraesCS1D01G405400.1 | Wheat | cytosol | 89.1 | 89.68 |
| GSMUA_Achr8P22260_001 | Banana | cytosol | 89.74 | 89.17 |
| GSMUA_Achr3P08430_001 | Banana | cytosol | 89.74 | 89.17 |
| Solyc01g056940.2.1 | Tomato | nucleus | 89.1 | 89.1 |
| Os01t0328400-01 | Rice | nucleus | 88.46 | 89.03 |
| EES02888 | Sorghum | cytosol | 88.46 | 89.03 |
| GSMUA_AchrUn_... | Banana | cytosol | 88.46 | 87.9 |
| HORVU1Hr1G023660.1 | Barley | extracellular | 89.1 | 77.65 |
| VIT_07s0005g02160.t01 | Wine grape | cytosol, plastid | 91.03 | 75.94 |
| PGSC0003DMT400011737 | Potato | cytosol | 87.82 | 75.69 |
| Solyc12g099030.1.1 | Tomato | plastid | 90.38 | 74.21 |
| CDX84153 | Canola | cytosol | 53.85 | 65.62 |
| CDX79660 | Canola | cytosol | 53.85 | 65.62 |
| CDX78108 | Canola | cytosol | 53.85 | 65.62 |
| CDX75066 | Canola | cytosol | 53.85 | 65.62 |
| CDX84576 | Canola | cytosol | 53.85 | 65.62 |
| CDX75065 | Canola | cytosol | 53.85 | 65.62 |
| CDX95351 | Canola | cytosol | 53.85 | 65.62 |
| CDX73619 | Canola | cytosol | 53.85 | 65.12 |
| CDY39163 | Canola | cytosol | 40.38 | 62.38 |
| CDY12428 | Canola | cytosol | 55.13 | 55.84 |
| CDY27155 | Canola | cytosol | 55.13 | 55.84 |
| CDY50712 | Canola | cytosol | 55.77 | 55.77 |
| CDY31710 | Canola | cytosol | 55.77 | 55.06 |
| CDX84182 | Canola | cytosol | 55.77 | 54.72 |
| CDX77550 | Canola | cytosol | 54.49 | 54.49 |
| Zm00001d032616_P001 | Maize | plastid | 52.56 | 52.56 |
| CDY23226 | Canola | cytosol, nucleus, plastid | 23.08 | 50.7 |
| CDX79186 | Canola | golgi, vacuole | 52.56 | 50.31 |
| HORVU1Hr1G087690.8 | Barley | nucleus | 73.08 | 42.54 |
| CDY00254 | Canola | cytosol | 26.92 | 39.62 |
| CDX79728 | Canola | cytosol | 38.46 | 26.43 |
| CDY29243 | Canola | cytosol | 41.67 | 26.32 |
| CDY71299 | Canola | cytosol | 7.69 | 14.63 |
| CDY71775 | Canola | cytosol | 7.69 | 14.46 |
| CDY70361 | Canola | cytosol | 8.97 | 13.33 |
| CDX95544 | Canola | cytosol | 5.77 | 11.69 |
| CDY46367 | Canola | cytosol | 10.9 | 11.11 |
Protein Annotations
| MapMan:17.1.3.1.29 | Gene3D:2.20.25.660 | Gene3D:3.10.20.90 | GO:A0A078ES39 | EnsemblPlants:CDY04715 | ProteinID:CDY04715 |
| ProteinID:CDY04715.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00119350001 |
| InterPro:IPR000626 | InterPro:IPR038582 | PFAM:PF00240 | PFAM:PF01599 | PRINTS:PR00348 | ScanProsite:PS00299 |
| PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF236 | InterPro:Ribosomal_S27a | InterPro:Ribosomal_zn-bd | InterPro:S27a-like_sf |
| SMART:SM00213 | SMART:SM01402 | SUPFAM:SSF54236 | SUPFAM:SSF57829 | UniParc:UPI0004EB8A4C | InterPro:Ubiquitin |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | SEG:seg | : | : |
Description
BnaC05g18740D
Coordinates
chrLK031957:-:71139..71694
Molecular Weight (calculated)
17727.7 Da
IEP (calculated)
10.528
GRAVY (calculated)
-0.767
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDG SGKVQRLRKE CPSVSCGPGT FMASHFDRHH CGKCGTTYVF KKPDEE
101: AVLQFYKVDG SGKVQRLRKE CPSVSCGPGT FMASHFDRHH CGKCGTTYVF KKPDEE
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHTHKKVKL
101: AVLQFYKVDG SGKVQRLKKE CPSVSCGPGT FMASHFDRHY CGKCGTTYVF KKADEE
101: AVLQFYKVDG SGKVQRLKKE CPSVSCGPGT FMASHFDRHY CGKCGTTYVF KKADEE
Arabidopsis Description
RPS27AAUbiquitin-40S ribosomal protein S27a-1 [Source:UniProtKB/Swiss-Prot;Acc:P59271]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.