Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36170.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT2G36170.1 | CDY17621 | AT2G01950.1 | 19000166 |
| AT3G52590.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT3G52590.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75065 | Canola | cytosol | 100.0 | 100.0 |
| CDX75066 | Canola | cytosol | 100.0 | 100.0 |
| VIT_08s0007g03030.t01 | Wine grape | cytosol | 100.0 | 100.0 |
| CDX78108 | Canola | cytosol | 100.0 | 100.0 |
| CDX95351 | Canola | cytosol | 100.0 | 100.0 |
| CDX79660 | Canola | cytosol | 100.0 | 100.0 |
| KRH64348 | Soybean | cytosol, endoplasmic reticulum | 100.0 | 100.0 |
| KRG96204 | Soybean | cytosol | 100.0 | 100.0 |
| CDX84576 | Canola | cytosol | 100.0 | 100.0 |
| CDX73619 | Canola | cytosol | 100.0 | 99.22 |
| AT3G52590.1 | Thale cress | cytosol | 99.22 | 99.22 |
| AT2G36170.1 | Thale cress | cytosol | 99.22 | 99.22 |
| EER92591 | Sorghum | cytosol | 98.44 | 97.67 |
| Zm00001d005334_P001 | Maize | cytosol, plastid | 98.44 | 97.67 |
| EER96363 | Sorghum | cytosol | 98.44 | 97.67 |
| TraesCS4A01G306500.1 | Wheat | cytosol | 98.44 | 97.67 |
| TraesCS4B01G008400.1 | Wheat | cytosol | 98.44 | 97.67 |
| TraesCS4D01G006900.1 | Wheat | cytosol | 98.44 | 97.67 |
| TraesCS4B01G233100.1 | Wheat | cytosol | 98.44 | 81.82 |
| TraesCS4D01G234300.1 | Wheat | cytosol | 98.44 | 79.75 |
| TraesCS4A01G077000.1 | Wheat | cytosol | 98.44 | 79.75 |
| CDY39163 | Canola | cytosol | 46.88 | 59.41 |
| CDY04715 | Canola | cytosol | 65.62 | 53.85 |
| CDY12472 | Canola | cytosol | 65.62 | 53.85 |
| CDY25783 | Canola | cytosol | 65.62 | 53.85 |
| CDY44146 | Canola | cytosol | 65.62 | 53.85 |
| CDX67885 | Canola | cytosol | 65.62 | 53.5 |
| CDX76623 | Canola | cytosol | 65.62 | 53.5 |
| CDX83344 | Canola | cytosol | 65.62 | 53.5 |
| CDX93983 | Canola | cytosol | 65.62 | 53.5 |
| CDY66301 | Canola | cytosol | 65.62 | 53.5 |
| CDY50916 | Canola | cytosol | 65.62 | 53.5 |
| CDY11410 | Canola | cytosol | 65.62 | 53.5 |
| CDY25100 | Canola | cytosol | 65.62 | 53.5 |
| CDY12428 | Canola | cytosol | 63.28 | 52.6 |
| CDY27155 | Canola | cytosol | 63.28 | 52.6 |
| CDY50712 | Canola | cytosol | 64.06 | 52.56 |
| CDY31710 | Canola | cytosol | 64.06 | 51.9 |
| CDX84182 | Canola | cytosol | 64.06 | 51.57 |
| CDX77550 | Canola | cytosol | 62.5 | 51.28 |
| CDY23226 | Canola | cytosol, nucleus, plastid | 28.12 | 50.7 |
| CDX79186 | Canola | golgi, vacuole | 63.28 | 49.69 |
| CDY00254 | Canola | cytosol | 33.59 | 40.57 |
| CDY29243 | Canola | cytosol | 46.88 | 24.29 |
| CDX79728 | Canola | cytosol | 41.41 | 23.35 |
| CDY71299 | Canola | cytosol | 7.81 | 12.2 |
| CDY71775 | Canola | cytosol | 7.81 | 12.05 |
| CDY70361 | Canola | cytosol | 8.59 | 10.48 |
| CDX95544 | Canola | cytosol | 5.47 | 9.09 |
| CDY46367 | Canola | cytosol | 8.59 | 7.19 |
Protein Annotations
| MapMan:17.1.2.1.43 | Gene3D:2.20.28.70 | Gene3D:3.10.20.90 | GO:A0A078D9Z2 | EnsemblPlants:CDX84153 | ProteinID:CDX84153 |
| ProteinID:CDX84153.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00141172001 |
| InterPro:IPR000626 | InterPro:IPR038587 | InterPro:L40e_sf | PFAM:PF00240 | PFAM:PF01020 | PRINTS:PR00348 |
| ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF255 | InterPro:Ribosomal_L40e | InterPro:Ribosomal_zn-bd |
| SMART:SM00213 | SMART:SM01377 | SUPFAM:SSF54236 | SUPFAM:SSF57829 | UniParc:UPI000056EF24 | InterPro:Ubiquitin |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | : | : | : |
Description
BnaC04g09150D
Coordinates
chrLK031836:-:238459..239625
Molecular Weight (calculated)
14674.2 Da
IEP (calculated)
10.606
GRAVY (calculated)
-0.638
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMALARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
Arabidopsis Description
RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.