CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50712	Canola	cytosol	98.72	98.72
CDY27155	Canola	cytosol	96.79	98.05
CDY12428	Canola	cytosol	96.79	98.05
CDY31710	Canola	cytosol	96.15	94.94
CDX84182	Canola	cytosol	96.15	94.34
Zm00001d036717_P001	Maize	cytosol	89.74	91.5
CDY23226	Canola	cytosol, nucleus, plastid	32.69	71.83
CDY39163	Canola	cytosol	42.31	65.35
CDX75065	Canola	cytosol	51.28	62.5
CDX75066	Canola	cytosol	51.28	62.5
CDX78108	Canola	cytosol	51.28	62.5
CDX79660	Canola	cytosol	51.28	62.5
CDX84153	Canola	cytosol	51.28	62.5
CDX84576	Canola	cytosol	51.28	62.5
CDX95351	Canola	cytosol	51.28	62.5
CDX73619	Canola	cytosol	51.28	62.02
CDY71299	Canola	cytosol	30.77	58.54
CDY71775	Canola	cytosol	30.77	57.83
CDY04715	Canola	cytosol	54.49	54.49
CDY12472	Canola	cytosol	54.49	54.49
CDY25783	Canola	cytosol	54.49	54.49
CDY44146	Canola	cytosol	54.49	54.49
CDX67885	Canola	cytosol	54.49	54.14
CDY66301	Canola	cytosol	54.49	54.14
CDY50916	Canola	cytosol	54.49	54.14
CDX76623	Canola	cytosol	54.49	54.14
CDX83344	Canola	cytosol	54.49	54.14
CDY25100	Canola	cytosol	54.49	54.14
CDX93983	Canola	cytosol	54.49	54.14
CDY11410	Canola	cytosol	54.49	54.14
CDX79186	Canola	golgi, vacuole	55.13	52.76
CDX95544	Canola	cytosol	25.64	51.95
CDY70361	Canola	cytosol	30.77	45.71
CDY00254	Canola	cytosol	26.28	38.68
CDX79728	Canola	cytosol	50.0	34.36
CDY29243	Canola	cytosol	53.85	34.01
CDY46367	Canola	cytosol	21.79	22.22

Protein Annotations

MapMan:19.2.2.3.1	Gene3D:3.10.20.90	EnsemblPlants:CDX77550	ProteinID:CDX77550	ProteinID:CDX77550.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00128447001	InterPro:IPR000626	InterPro:Nedd8-like	PFAM:PF00240
PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF230	SMART:SM00213
SUPFAM:SSF54236	UniParc:UPI0004EE7909	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

BnaA07g06880D

Coordinates

chrLK031811:+:1687695..1688884

Molecular Weight (calculated)

17428.2 Da

IEP (calculated)

5.849

GRAVY (calculated)

-0.381

Length

156 amino acids

Sequence
(BLAST)

001: MQIFIKTLTG KTITLEVESS DTIDNVKSKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGFGLL

Best Arabidopsis Sequence Match ( AT1G31340.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGFGLL

Arabidopsis Description

RUB1RUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178W1F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.