CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

plastid 2
mitochondrion 3
golgi 3
extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75065	Canola	cytosol	49.69	63.28
CDX75066	Canola	cytosol	49.69	63.28
CDX78108	Canola	cytosol	49.69	63.28
CDX79660	Canola	cytosol	49.69	63.28
CDX84153	Canola	cytosol	49.69	63.28
CDX95351	Canola	cytosol	49.69	63.28
CDX84576	Canola	cytosol	49.69	63.28
CDX73619	Canola	cytosol	49.69	62.79
CDY12428	Canola	cytosol	53.37	56.49
CDY27155	Canola	cytosol	53.37	56.49
CDY50712	Canola	cytosol	53.99	56.41
CDY31710	Canola	cytosol	53.99	55.7
CDX84182	Canola	cytosol	53.99	55.35
CDX77550	Canola	cytosol	52.76	55.13
CDY39163	Canola	cytosol	33.74	54.46
CDY44146	Canola	cytosol	50.31	52.56
CDY04715	Canola	cytosol	50.31	52.56
CDY12472	Canola	cytosol	50.31	52.56
CDY25783	Canola	cytosol	50.31	52.56
CDY11410	Canola	cytosol	50.31	52.23
CDY50916	Canola	cytosol	50.31	52.23
CDY66301	Canola	cytosol	50.31	52.23
CDY25100	Canola	cytosol	50.31	52.23
CDX67885	Canola	cytosol	50.31	52.23
CDX93983	Canola	cytosol	50.31	52.23
CDX83344	Canola	cytosol	50.31	52.23
CDX76623	Canola	cytosol	50.31	52.23
GSMUA_Achr10P...	Banana	cytosol, extracellular	58.28	50.53
CDY23226	Canola	cytosol, nucleus, plastid	20.86	47.89
CDY00254	Canola	cytosol	30.67	47.17
CDX79728	Canola	cytosol	34.97	25.11
CDY29243	Canola	cytosol	36.81	24.29
CDY71299	Canola	cytosol	9.82	19.51
CDY71775	Canola	cytosol	9.82	19.28
CDY70361	Canola	cytosol	9.82	15.24
CDY46367	Canola	cytosol	7.98	8.5
CDX95544	Canola	cytosol	3.68	7.79

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	EnsemblPlants:CDX79186	ProteinID:CDX79186	ProteinID:CDX79186.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00131756001	InterPro:IPR000626	PFAM:PF00240	PRINTS:PR00348
ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF240	SMART:SM00213	SUPFAM:SSF54236
UniParc:UPI0004EE0158	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	SEG:seg

Description

BnaC06g21170D

Coordinates

chrLK031817:-:74624..76527

Molecular Weight (calculated)

18499.7 Da

IEP (calculated)

10.829

GRAVY (calculated)

-0.302

Length

163 amino acids

Sequence
(BLAST)

001: MNAFSQKNIY KIGKFLLLVI ASPHNRVVFI LFYKSKPKDL FSLSQFSFSK SKENNQSSLK SRVTIKMQIF VKTLTGKTIT LEVESSDTID NVKAKIQDKE
101: GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITGGKL RHH

Best Arabidopsis Sequence Match ( AT4G05050.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGF

Arabidopsis Description

UBQ11Polyubiquitin [Source:UniProtKB/TrEMBL;Acc:Q8H0Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.