Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- cytosol 2
- nucleus 1
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 37.23 | 86.42 |
| GSMUA_Achr5P00970_001 | Banana | cytosol | 43.09 | 63.28 |
| GSMUA_Achr8P32920_001 | Banana | cytosol | 43.09 | 63.28 |
| GSMUA_Achr8P07770_001 | Banana | cytosol, unclear | 43.09 | 63.28 |
| GSMUA_Achr11P... | Banana | cytosol | 42.55 | 62.5 |
| CDX79186 | Canola | golgi, vacuole | 50.53 | 58.28 |
| GSMUA_Achr7P26310_001 | Banana | cytosol | 44.15 | 53.21 |
| GSMUA_Achr3P30150_001 | Banana | cytosol | 44.15 | 52.87 |
| GSMUA_Achr3P08430_001 | Banana | cytosol | 43.09 | 51.59 |
| GSMUA_Achr8P22260_001 | Banana | cytosol | 43.09 | 51.59 |
| GSMUA_AchrUn_... | Banana | cytosol | 42.02 | 50.32 |
| GSMUA_Achr4P04260_001 | Banana | cytosol | 21.28 | 38.46 |
| GSMUA_Achr1P24990_001 | Banana | cytosol, endoplasmic reticulum, mitochondrion, plastid | 29.79 | 35.22 |
| GSMUA_Achr5P00760_001 | Banana | cytosol | 31.91 | 34.88 |
| GSMUA_AchrUn_... | Banana | cytosol | 5.85 | 11.83 |
| GSMUA_Achr8P07340_001 | Banana | cytosol, plasma membrane | 5.85 | 7.97 |
| GSMUA_Achr9P30160_001 | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr10G04880_001 | EnsemblPlants:GSMUA_Achr10P04880_001 | EnsemblPlants:GSMUA_Achr10T04880_001 | InterPro:IPR000626 |
| UniProt:M0RFG5 | PFAM:PF00240 | PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR10666 |
| PANTHER:PTHR10666:SF240 | SMART:SM00213 | SUPFAM:SSF54236 | TMHMM:TMhelix | UniParc:UPI00029553B2 | InterPro:Ubiquitin |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | : | : | : |
Description
Polyubiquitin (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr10G04880_001]
Coordinates
chr10:-:14515482..14517797
Molecular Weight (calculated)
22251.6 Da
IEP (calculated)
7.860
GRAVY (calculated)
0.145
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSYIERSNN MLCIICSLMD LCWWHRCGTL HHKIFVLLYE LYVGLLDFTL TCVCIIDQWS NLFLDFLVIF LIHDLFGRML IHFYYFIQMQ IFVKTLTGKT
101: ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR LRGGQYYNVF VKTMNGKIHQ MRKMHLYI
101: ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR LRGGQYYNVF VKTMNGKIHQ MRKMHLYI
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGF
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGF
Arabidopsis Description
UBQ11Polyubiquitin [Source:UniProtKB/TrEMBL;Acc:Q8H0Y0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.