Factsheet for GSMUA_AchrUn_randomP27420_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70361	Canola	cytosol	100.0	88.57
CDX95544	Canola	cytosol	70.97	85.71
TraesCS2D01G474700.1	Wheat	cytosol	70.97	85.71
GSMUA_Achr8P07340_001	Banana	cytosol, plasma membrane	100.0	67.39
TraesCS7B01G381800.1	Wheat	cytosol	100.0	60.78
TraesCS6B01G164900.1	Wheat	cytosol	100.0	60.78
TraesCS6B01G140600.1	Wheat	cytosol	100.0	60.78
TraesCS6A01G112400.1	Wheat	cytosol	100.0	60.78
TraesCS5B01G080200.1	Wheat	cytosol	100.0	60.78
TraesCS2B01G426500.1	Wheat	cytosol	100.0	60.78
TraesCS7A01G453400.1	Wheat	cytosol	98.92	60.53
EES11473	Sorghum	cytosol	97.85	59.48
KRH19844	Soybean	cytosol	100.0	40.43
Os06t0673500-01	Rice	cytosol	78.49	34.93
GSMUA_Achr4P04260_001	Banana	cytosol	35.48	31.73
GSMUA_Achr7P26310_001	Banana	cytosol	51.61	30.77
GSMUA_Achr3P30150_001	Banana	cytosol	50.54	29.94
TraesCS5A01G292600.1	Wheat	cytosol	46.24	25.29
GSMUA_Achr9P30160_001	Banana	cytosol	18.28	22.08
GSMUA_Achr5P00760_001	Banana	cytosol	27.96	15.12
GSMUA_Achr8P22260_001	Banana	cytosol	15.05	8.92
GSMUA_AchrUn_...	Banana	cytosol	15.05	8.92
GSMUA_Achr3P08430_001	Banana	cytosol	15.05	8.92
GSMUA_Achr1P24990_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	15.05	8.81
GSMUA_Achr8P07770_001	Banana	cytosol, unclear	11.83	8.59
GSMUA_Achr8P32920_001	Banana	cytosol	11.83	8.59
GSMUA_Achr11P...	Banana	cytosol	11.83	8.59
GSMUA_Achr5P00970_001	Banana	cytosol	11.83	8.59
GSMUA_Achr10P...	Banana	cytosol, extracellular	11.83	5.85
GSMUA_Achr11P...	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP27420_001	EnsemblPlants:GSMUA_AchrUn_randomT27420_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG27420_001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000626	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom
PANTHER:PTHR10666	PANTHER:PTHR10666:SF240	PFAM:PF00240	PFscan:PS50053	PRINTS:PR00348	ScanProsite:PS00299
SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI0002962BF0	UniProt:M0UCV0	MapMan:35.1	:

Description

Polyubiquitin 10 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG27420_001]

Coordinates

chrchrUn_random:+:133969874..133970743

Molecular Weight (calculated)

10429.8 Da

IEP (calculated)

9.075

GRAVY (calculated)

-0.238

Length

93 amino acids

Sequence
(BLAST)

1: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEV

Best Arabidopsis Sequence Match ( AT4G05050.3 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGF

Arabidopsis Description

UBQ11Polyubiquitin [Source:UniProtKB/TrEMBL;Acc:Q8H0Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.