CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12428	Canola	cytosol	100.0	100.0
CDY50712	Canola	cytosol	98.05	96.79
CDX77550	Canola	cytosol	98.05	96.79
CDY31710	Canola	cytosol	98.05	95.57
CDX84182	Canola	cytosol	98.05	94.97
Zm00001d036717_P001	Maize	cytosol	90.26	90.85
CDY23226	Canola	cytosol, nucleus, plastid	33.77	73.24
CDY39163	Canola	cytosol	43.51	66.34
CDX75065	Canola	cytosol	52.6	63.28
CDX75066	Canola	cytosol	52.6	63.28
CDX78108	Canola	cytosol	52.6	63.28
CDX79660	Canola	cytosol	52.6	63.28
CDX84153	Canola	cytosol	52.6	63.28
CDX84576	Canola	cytosol	52.6	63.28
CDX95351	Canola	cytosol	52.6	63.28
CDX73619	Canola	cytosol	52.6	62.79
CDY71299	Canola	cytosol	31.17	58.54
CDY71775	Canola	cytosol	31.17	57.83
CDY04715	Canola	cytosol	55.84	55.13
CDY12472	Canola	cytosol	55.84	55.13
CDY25783	Canola	cytosol	55.84	55.13
CDY44146	Canola	cytosol	55.84	55.13
CDY66301	Canola	cytosol	55.84	54.78
CDY11410	Canola	cytosol	55.84	54.78
CDX93983	Canola	cytosol	55.84	54.78
CDX83344	Canola	cytosol	55.84	54.78
CDY25100	Canola	cytosol	55.84	54.78
CDX67885	Canola	cytosol	55.84	54.78
CDX76623	Canola	cytosol	55.84	54.78
CDY50916	Canola	cytosol	55.84	54.78
CDX79186	Canola	golgi, vacuole	56.49	53.37
CDX95544	Canola	cytosol	25.97	51.95
CDY70361	Canola	cytosol	31.17	45.71
CDY00254	Canola	cytosol	27.27	39.62
CDY29243	Canola	cytosol	55.19	34.41
CDX79728	Canola	cytosol	50.65	34.36
CDY46367	Canola	cytosol	22.08	22.22

Protein Annotations

MapMan:19.2.2.3.1	Gene3D:3.10.20.90	UniProt:A0A078GKT6	ProteinID:CDY12428.1	EnsemblPlants:CDY27155	ProteinID:CDY27155
ProteinID:CDY27155.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00037002001	InterPro:IPR000626
InterPro:Nedd8-like	PFAM:PF00240	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666
PANTHER:PTHR10666:SF230	SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI0000E646C3	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	SEG:seg	:	:	:

Description

BnaA08g07930DBnaA08g07930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKT6]

Coordinates

chrLK032200:+:353045..354149

Molecular Weight (calculated)

17185.7 Da

IEP (calculated)

5.358

GRAVY (calculated)

-0.481

Length

154 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKSKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGSD

Best Arabidopsis Sequence Match ( AT1G31340.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGFGLL

Arabidopsis Description

RUB1RUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178W1F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.