Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G306500.1 | Wheat | cytosol | 81.65 | 100.0 |
| TraesCS4D01G006900.1 | Wheat | cytosol | 81.65 | 100.0 |
| GSMUA_Achr8P32920_001 | Banana | cytosol | 80.38 | 99.22 |
| Solyc08g083120.2.1 | Tomato | cytosol, nucleus | 80.38 | 99.22 |
| Solyc03g082570.2.1 | Tomato | cytosol | 80.38 | 99.22 |
| Solyc01g096290.2.1 | Tomato | cytosol | 80.38 | 99.22 |
| PGSC0003DMT400047686 | Potato | cytosol | 80.38 | 99.22 |
| PGSC0003DMT400031900 | Potato | cytosol | 80.38 | 99.22 |
| PGSC0003DMT400013958 | Potato | cytosol | 80.38 | 99.22 |
| PGSC0003DMT400000364 | Potato | cytosol | 80.38 | 99.22 |
| GSMUA_Achr8P07770_001 | Banana | cytosol, unclear | 80.38 | 99.22 |
| GSMUA_Achr5P00970_001 | Banana | cytosol | 80.38 | 99.22 |
| TraesCS7D01G454100.1 | Wheat | cytosol, golgi, unclear | 48.1 | 98.7 |
| Zm00001d005334_P001 | Maize | cytosol, plastid | 80.38 | 98.45 |
| EER92591 | Sorghum | cytosol | 80.38 | 98.45 |
| EER96363 | Sorghum | cytosol | 80.38 | 98.45 |
| KRH64348 | Soybean | cytosol, endoplasmic reticulum | 79.75 | 98.44 |
| CDX75065 | Canola | cytosol | 79.75 | 98.44 |
| CDX75066 | Canola | cytosol | 79.75 | 98.44 |
| CDX78108 | Canola | cytosol | 79.75 | 98.44 |
| CDX79660 | Canola | cytosol | 79.75 | 98.44 |
| CDX84153 | Canola | cytosol | 79.75 | 98.44 |
| CDX84576 | Canola | cytosol | 79.75 | 98.44 |
| KRH67947 | Soybean | cytosol | 79.75 | 98.44 |
| KRH53585 | Soybean | cytosol | 79.75 | 98.44 |
| CDX95351 | Canola | cytosol | 79.75 | 98.44 |
| KRG96204 | Soybean | cytosol | 79.75 | 98.44 |
| VIT_08s0007g03030.t01 | Wine grape | cytosol | 79.75 | 98.44 |
| GSMUA_Achr11P... | Banana | cytosol | 79.75 | 98.44 |
| CDX73619 | Canola | cytosol | 79.75 | 97.67 |
| AT3G52590.1 | Thale cress | cytosol | 79.11 | 97.66 |
| VIT_16s0098g01190.t01 | Wine grape | cytosol | 79.11 | 97.66 |
| AT2G36170.1 | Thale cress | cytosol | 79.11 | 97.66 |
| Solyc08g008590.2.1 | Tomato | cytosol, nucleus | 79.75 | 92.65 |
| PGSC0003DMT400015022 | Potato | cytosol | 75.32 | 90.84 |
| HORVU4Hr1G001170.5 | Barley | cytosol | 62.03 | 89.09 |
| HORVU4Hr1G065100.3 | Barley | cytosol | 62.66 | 88.39 |
| TraesCS4D01G218300.1 | Wheat | cytosol | 67.72 | 86.99 |
| TraesCS5D01G269800.1 | Wheat | cytosol | 69.62 | 81.48 |
| TraesCS6D01G137400.1 | Wheat | cytosol | 67.72 | 79.26 |
| TraesCS7D01G474200.1 | Wheat | cytosol | 68.35 | 77.7 |
| TraesCS1D01G228700.1 | Wheat | cytosol | 68.35 | 77.7 |
| TraesCS7D01G474300.1 | Wheat | cytosol | 67.72 | 76.98 |
| TraesCS2D01G458600.1 | Wheat | cytosol | 68.99 | 76.76 |
| TraesCS2D01G458700.1 | Wheat | cytosol | 68.35 | 76.06 |
| TraesCS2D01G580700.1 | Wheat | cytosol | 63.92 | 72.66 |
| TraesCS4D01G218400.1 | Wheat | cytosol | 68.99 | 72.19 |
| TraesCS2D01G459000.1 | Wheat | cytosol | 59.49 | 68.12 |
| TraesCS2D01G459100.1 | Wheat | cytosol | 58.86 | 67.39 |
| TraesCS2D01G459200.1 | Wheat | cytosol | 58.86 | 67.39 |
| KRG99541 | Soybean | cytosol | 46.84 | 66.67 |
| TraesCS5D01G194700.1 | Wheat | cytosol | 58.23 | 64.34 |
| Solyc06g053210.2.1 | Tomato | cytosol | 72.15 | 60.64 |
| TraesCS2D01G092300.1 | Wheat | cytosol | 55.7 | 60.27 |
| TraesCS2D01G092200.1 | Wheat | cytosol | 56.33 | 57.79 |
| TraesCS7D01G442900.1 | Wheat | cytosol | 53.8 | 55.56 |
| TraesCS6D01G248600.1 | Wheat | cytosol | 53.8 | 55.19 |
| TraesCS1D01G109800.1 | Wheat | cytosol | 53.16 | 54.19 |
| TraesCS1D01G405400.1 | Wheat | cytosol | 53.16 | 54.19 |
| TraesCS7D01G494400.1 | Wheat | cytosol | 51.9 | 53.59 |
| TraesCS5D01G231400.1 | Wheat | cytosol | 51.9 | 53.59 |
| TraesCS1D01G174700.1 | Wheat | cytosol | 53.8 | 52.47 |
| TraesCS7D01G143000.1 | Wheat | cytosol | 51.27 | 52.26 |
| TraesCS7D01G453100.1 | Wheat | cytosol | 51.27 | 52.26 |
| TraesCS1D01G206100.1 | Wheat | cytosol | 50.0 | 50.97 |
| TraesCS6D01G136800.1 | Wheat | cytosol | 45.57 | 49.66 |
| TraesCS1D01G206400.1 | Wheat | cytosol | 48.1 | 49.03 |
| CDY00254 | Canola | cytosol | 27.22 | 40.57 |
| TraesCS2D01G405500.1 | Wheat | cytosol | 55.7 | 38.6 |
| TraesCS6D01G109600.1 | Wheat | cytosol | 55.7 | 38.43 |
| TraesCS7D01G443100.1 | Wheat | cytosol | 55.06 | 37.99 |
| TraesCS7D01G442700.1 | Wheat | cytosol, nucleus | 55.7 | 28.85 |
| TraesCS3D01G510800.1 | Wheat | cytosol | 39.87 | 28.12 |
| TraesCS3D01G510400.1 | Wheat | mitochondrion | 39.24 | 27.68 |
| TraesCS3D01G510600.1 | Wheat | cytosol | 37.97 | 26.79 |
| TraesCS6D01G125600.1 | Wheat | cytosol | 55.06 | 26.36 |
| TraesCS3D01G510500.1 | Wheat | mitochondrion | 18.99 | 26.32 |
| TraesCS3D01G511200.1 | Wheat | cytosol | 32.91 | 23.42 |
| TraesCS1D01G427100.1 | Wheat | cytosol | 33.54 | 23.35 |
| TraesCS3D01G039700.1 | Wheat | cytosol | 31.01 | 21.68 |
| TraesCS3D01G511000.1 | Wheat | cytosol | 38.61 | 20.61 |
| TraesCS3D01G510700.1 | Wheat | cytosol, nucleus, plastid | 37.97 | 20.27 |
| TraesCS3D01G510300.2 | Wheat | nucleus | 37.97 | 20.2 |
| TraesCS3D01G510900.1 | Wheat | nucleus | 37.97 | 20.13 |
| TraesCS7D01G100100.1 | Wheat | cytosol | 29.75 | 19.58 |
| TraesCS3D01G510200.1 | Wheat | cytosol | 27.22 | 19.11 |
| TraesCS3D01G511500.1 | Wheat | nucleus | 34.81 | 18.39 |
| TraesCS3D01G511900.1 | Wheat | mitochondrion | 37.97 | 18.18 |
| TraesCS7D01G024600.1 | Wheat | cytosol, mitochondrion | 37.97 | 16.35 |
| TraesCS5D01G391800.1 | Wheat | mitochondrion | 28.48 | 15.52 |
| TraesCS5D01G087500.1 | Wheat | cytosol | 18.99 | 13.1 |
| TraesCS1D01G314000.1 | Wheat | cytosol | 35.44 | 9.49 |
| TraesCS2D01G474700.1 | Wheat | cytosol | 4.43 | 9.09 |
| TraesCS7D01G466600.1 | Wheat | cytosol | 7.59 | 7.84 |
Protein Annotations
| MapMan:17.1.2.1.43 | Gene3D:2.20.28.70 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR000626 | InterPro:IPR038587 | InterPro:L40e_sf | PFAM:PF00240 | PFAM:PF01020 |
| PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF255 | InterPro:Ribosomal_L40e | SMART:SM00213 | SMART:SM01377 |
| SUPFAM:SSF54236 | EnsemblPlantsGene:TraesCS4D01G234300 | EnsemblPlants:TraesCS4D01G234300.1 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | TIGR:cd01803 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:394384170..394386169
Molecular Weight (calculated)
17944.2 Da
IEP (calculated)
10.351
GRAVY (calculated)
-0.323
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGEYLLL RCSSFLFLSF LPAAVANLCF VPAGIPPDQQ RLIFAGKQLE DGRTLADYNI QKESTLHLVL
101: RLRGGIIEPS LQALARKYNQ EKMICRKCYA RLHPRAVNCR KKKCGHSNQL RPKKKIKN
101: RLRGGIIEPS LQALARKYNQ EKMICRKCYA RLHPRAVNCR KKKCGHSNQL RPKKKIKN
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
Arabidopsis Description
RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.