Factsheet for TraesCS5D01G231400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31340.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT1G31340.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT1G31340.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G222800.1	Wheat	cytosol	100.0	100.0
EER96746	Sorghum	cytosol	100.0	100.0
EER88734	Sorghum	cytosol	99.35	99.35
TraesCS7A01G506300.1	Wheat	cytosol, plastid	99.35	99.35
Os06t0650100-01	Rice	cytosol, extracellular, plasma membrane	99.35	99.35
TraesCS7B01G413800.1	Wheat	cytosol	99.35	99.35
TraesCS7D01G494400.1	Wheat	cytosol	99.35	99.35
TraesCS7D01G454100.1	Wheat	cytosol, golgi, unclear	49.67	98.7
Solyc10g005560.2.1	Tomato	cytosol, nucleus	99.35	98.7
KRH13718	Soybean	cytosol, endoplasmic reticulum, nucleus	98.69	98.05
KRH43738	Soybean	cytosol	98.69	98.05
AT1G31340.1	Thale cress	cytosol	99.35	97.44
CDY50712	Canola	cytosol	99.35	97.44
TraesCS6D01G136800.1	Wheat	cytosol	92.16	97.24
VIT_19s0085g00040.t01	Wine grape	cytosol, extracellular	98.04	96.77
GSMUA_Achr7P26310_001	Banana	cytosol	98.04	96.15
GSMUA_Achr3P30150_001	Banana	cytosol	98.04	95.54
TraesCS1D01G206100.1	Wheat	cytosol	92.81	91.61
Zm00001d036717_P001	Maize	cytosol	91.5	91.5
TraesCS7D01G143000.1	Wheat	cytosol	92.16	90.97
TraesCS1D01G206400.1	Wheat	cytosol	91.5	90.32
TraesCS6D01G248600.1	Wheat	cytosol	81.05	80.52
TraesCS7D01G442900.1	Wheat	cytosol	80.39	80.39
TraesCS7D01G453100.1	Wheat	cytosol	76.47	75.48
HORVU7Hr1G029150.2	Barley	cytosol	89.54	75.27
HORVU7Hr1G029070.1	Barley	cytosol	88.24	71.81
HORVU7Hr1G029100.1	Barley	cytosol	89.54	71.73
HORVU3Hr1G014150.2	Barley	cytosol	90.85	68.47
HORVU3Hr1G014180.3	Barley	cytosol	90.85	68.47
TraesCS4D01G218300.1	Wheat	cytosol	52.29	65.04
TraesCS4D01G006900.1	Wheat	cytosol	53.59	63.57
TraesCS5D01G269800.1	Wheat	cytosol	52.29	59.26
TraesCS6D01G137400.1	Wheat	cytosol	50.98	57.78
TraesCS2D01G458600.1	Wheat	cytosol	52.94	57.04
TraesCS7D01G474200.1	Wheat	cytosol	51.63	56.83
TraesCS2D01G458700.1	Wheat	cytosol	52.29	56.34
TraesCS7D01G474300.1	Wheat	cytosol	50.98	56.12
TraesCS1D01G405400.1	Wheat	cytosol	56.21	55.48
TraesCS1D01G109800.1	Wheat	cytosol	56.21	55.48
TraesCS1D01G228700.1	Wheat	cytosol	49.67	54.68
TraesCS4D01G218400.1	Wheat	cytosol	53.59	54.3
TraesCS6D01G109600.1	Wheat	cytosol	81.05	54.15
TraesCS7D01G443100.1	Wheat	cytosol	80.39	53.71
TraesCS2D01G405500.1	Wheat	cytosol	79.74	53.51
TraesCS1D01G174700.1	Wheat	cytosol	55.56	52.47
TraesCS2D01G474700.1	Wheat	cytosol	26.14	51.95
TraesCS4D01G234300.1	Wheat	cytosol	53.59	51.9
TraesCS2D01G580700.1	Wheat	cytosol	47.06	51.8
TraesCS2D01G459100.1	Wheat	cytosol	44.44	49.28
TraesCS2D01G459200.1	Wheat	cytosol	43.79	48.55
TraesCS2D01G459000.1	Wheat	cytosol	43.14	47.83
TraesCS5D01G194700.1	Wheat	cytosol	43.79	46.85
TraesCS7D01G442700.1	Wheat	cytosol, nucleus	81.05	40.66
TraesCS3D01G510600.1	Wheat	cytosol	58.82	40.18
TraesCS3D01G510800.1	Wheat	cytosol	58.17	39.73
TraesCS3D01G510400.1	Wheat	mitochondrion	57.52	39.29
TraesCS2D01G092300.1	Wheat	cytosol	37.25	39.04
TraesCS2D01G092200.1	Wheat	cytosol	37.91	37.66
TraesCS3D01G511200.1	Wheat	cytosol	49.02	33.78
TraesCS3D01G039700.1	Wheat	cytosol	49.67	33.63
TraesCS6D01G125600.1	Wheat	cytosol	71.9	33.33
TraesCS7D01G466600.1	Wheat	cytosol	31.37	31.37
TraesCS1D01G427100.1	Wheat	cytosol	45.75	30.84
TraesCS3D01G510200.1	Wheat	cytosol	44.44	30.22
TraesCS3D01G510700.1	Wheat	cytosol, nucleus, plastid	58.17	30.07
TraesCS5D01G087500.1	Wheat	cytosol	44.44	29.69
TraesCS3D01G510300.2	Wheat	nucleus	56.21	28.96
TraesCS3D01G511000.1	Wheat	cytosol	54.9	28.38
TraesCS7D01G100100.1	Wheat	cytosol	43.79	27.92
TraesCS3D01G511900.1	Wheat	mitochondrion	60.13	27.88
TraesCS3D01G510900.1	Wheat	nucleus	52.94	27.18
TraesCS3D01G511500.1	Wheat	nucleus	52.94	27.09
TraesCS3D01G510500.1	Wheat	mitochondrion	19.61	26.32
TraesCS5D01G391800.1	Wheat	mitochondrion	45.1	23.79
TraesCS7D01G024600.1	Wheat	cytosol, mitochondrion	55.56	23.16
TraesCS1D01G314000.1	Wheat	cytosol	54.25	14.07

Protein Annotations

MapMan:19.2.2.3.1	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626
InterPro:Nedd8-like	PFAM:PF00240	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666
PANTHER:PTHR10666:SF230	SMART:SM00213	SUPFAM:SSF54236	EnsemblPlantsGene:TraesCS5D01G231400	EnsemblPlants:TraesCS5D01G231400.1	InterPro:Ubiquitin
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	TIGR:cd01803	TIGR:cd01806	SEG:seg

Description

No Description!

Coordinates

chr5D:-:338656788..338658172

Molecular Weight (calculated)

17130.7 Da

IEP (calculated)

5.849

GRAVY (calculated)

-0.448

Length

153 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGY

Best Arabidopsis Sequence Match ( AT1G31340.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGFGLL

Arabidopsis Description

RUB1RUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178W1F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.