Factsheet for Os06t0650100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 24083427
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31340.1	Os10t0114400-01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88734	Sorghum	cytosol	100.0	100.0
TraesCS7A01G506300.1	Wheat	cytosol, plastid	100.0	100.0
TraesCS7B01G413800.1	Wheat	cytosol	100.0	100.0
TraesCS7D01G494400.1	Wheat	cytosol	100.0	100.0
Os09t0420800-01	Rice	cytosol, extracellular, plastid	99.35	99.35
TraesCS5B01G222800.1	Wheat	cytosol	99.35	99.35
TraesCS5D01G231400.1	Wheat	cytosol	99.35	99.35
EER96746	Sorghum	cytosol	99.35	99.35
PGSC0003DMT400029234	Potato	cytosol	99.35	98.7
KRH13718	Soybean	cytosol, endoplasmic reticulum, nucleus	98.69	98.05
KRH43738	Soybean	cytosol	98.69	98.05
AT1G31340.1	Thale cress	cytosol	99.35	97.44
CDY50712	Canola	cytosol	99.35	97.44
VIT_19s0085g00040.t01	Wine grape	cytosol, extracellular	98.04	96.77
GSMUA_Achr7P26310_001	Banana	cytosol	98.04	96.15
GSMUA_Achr3P30150_001	Banana	cytosol	98.04	95.54
Zm00001d036717_P001	Maize	cytosol	91.5	91.5
HORVU7Hr1G029150.2	Barley	cytosol	89.54	75.27
HORVU7Hr1G029070.1	Barley	cytosol	88.24	71.81
HORVU7Hr1G029100.1	Barley	cytosol	89.54	71.73
HORVU3Hr1G014180.3	Barley	cytosol	90.85	68.47
HORVU3Hr1G014150.2	Barley	cytosol	90.85	68.47
Os09t0452700-00	Rice	cytosol, extracellular, plasma membrane, plastid	53.59	58.57
Os06t0673500-01	Rice	cytosol	78.43	57.42
Os05t0160200-01	Rice	nucleus	56.21	55.48
Os01t0328400-01	Rice	nucleus	56.21	55.48
Os10t0491801-00	Rice	cytosol	37.91	39.46
Os07t0489500-00	Rice	cytosol	52.29	31.5
Os04t0628100-01	Rice	plasma membrane	79.08	30.87
Os02t0161900-01	Rice	extracellular, vacuole	81.05	25.62
Os06t0681400-01	Rice	cytosol	81.05	22.3

Protein Annotations

MapMan:19.2.2.3.1	Gene3D:3.10.20.90	EntrezGene:4341684	EMBL:AK062354	ProteinID:BAD38105.1	ProteinID:BAS98896.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	InterPro:IPR000626	InterPro:Nedd8-like	EnsemblPlantsGene:Os06g0650100	EnsemblPlants:Os06t0650100-01
UniProt:P0C031	PFAM:PF00240	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666
PANTHER:PTHR10666:SF230	SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI00003D6E68	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	RefSeq:XP_015641274.1	SEG:seg	:	:

Description

UBIQUITIN 5Similar to Ubiquitin-NEDD8-like protein RUB2. (Os06t0650100-01)

Coordinates

chr6:+:26585560..26588130

Molecular Weight (calculated)

17095.7 Da

IEP (calculated)

5.849

GRAVY (calculated)

-0.462

Length

153 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGQ

Best Arabidopsis Sequence Match ( AT1G31340.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGFGLL

Arabidopsis Description

RUB1RUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178W1F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.