CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31340.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0420800-01	Rice	cytosol, extracellular, plastid	100.0	100.0
TraesCS5D01G231400.1	Wheat	cytosol	100.0	100.0
TraesCS5B01G222800.1	Wheat	cytosol	100.0	100.0
EER88734	Sorghum	cytosol	99.35	99.35
HORVU7Hr1G113500.1	Barley	cytosol, extracellular	99.35	99.35
Os06t0650100-01	Rice	cytosol, extracellular, plasma membrane	99.35	99.35
TraesCS7D01G494400.1	Wheat	cytosol	99.35	99.35
TraesCS7B01G413800.1	Wheat	cytosol	99.35	99.35
TraesCS7A01G506300.1	Wheat	cytosol, plastid	99.35	99.35
Solyc10g005560.2.1	Tomato	cytosol, nucleus	99.35	98.7
PGSC0003DMT400029234	Potato	cytosol	99.35	98.7
KRH43738	Soybean	cytosol	98.69	98.05
KRH13718	Soybean	cytosol, endoplasmic reticulum, nucleus	98.69	98.05
AT1G31340.1	Thale cress	cytosol	99.35	97.44
CDY50712	Canola	cytosol	99.35	97.44
VIT_19s0085g00040.t01	Wine grape	cytosol, extracellular	98.04	96.77
GSMUA_Achr7P26310_001	Banana	cytosol	98.04	96.15
GSMUA_Achr3P30150_001	Banana	cytosol	98.04	95.54
EER89210	Sorghum	cytosol	49.02	94.94
Zm00001d036717_P001	Maize	cytosol	91.5	91.5
EER92591	Sorghum	cytosol	53.59	63.57
EER96363	Sorghum	cytosol	53.59	63.57
EER99330	Sorghum	cytosol	52.29	55.94
EER97248	Sorghum	cytosol	49.67	55.88
EES02888	Sorghum	cytosol	56.21	55.48
EES17768	Sorghum	cytosol	56.21	55.48
OQU89356	Sorghum	cytosol	50.33	55.4
KXG35893	Sorghum	cytosol	50.33	54.23
EER97249	Sorghum	cytosol	49.67	53.9
KXG38689	Sorghum	cytosol	45.1	50.37
KXG20618	Sorghum	cytosol, plastid	81.05	45.42
OQU90737	Sorghum	cytosol	49.67	43.43
KXG39742	Sorghum	cytosol	40.52	43.36
EES01965	Sorghum	cytosol	81.05	40.66
KXG38267	Sorghum	cytosol	39.87	38.12
OQU89357	Sorghum	cytosol, extracellular	28.76	34.92
KXG28223	Sorghum	mitochondrion	47.71	33.95
EER90271	Sorghum	cytosol	81.05	32.55
KXG29530	Sorghum	cytosol	81.05	32.55
KXG29523	Sorghum	cytosol	81.05	32.55
KXG20644	Sorghum	cytosol	81.05	32.55
OQU83265	Sorghum	cytosol	45.75	31.67
EES11473	Sorghum	cytosol	31.37	31.37
OQU76939	Sorghum	cytosol, plastid	81.05	27.25
EES05681	Sorghum	cytosol	81.05	27.02
KXG29531	Sorghum	cytosol	76.47	25.6

Protein Annotations

MapMan:19.2.2.3.1	Gene3D:3.10.20.90	EntrezGene:8062113	UniProt:C5XCV9	EnsemblPlants:EER96746	ProteinID:EER96746
ProteinID:EER96746.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009693	GO:GO:0009987	GO:GO:0016020	InterPro:IPR000626	InterPro:Nedd8-like
PFAM:PF00240	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF230
SMART:SM00213	EnsemblPlantsGene:SORBI_3002G204200	SUPFAM:SSF54236	unigene:Sbi.8949	UniParc:UPI00003FF3B1	InterPro:Ubiquitin
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	RefSeq:XP_002460225.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:59558977..59560922

Molecular Weight (calculated)

17130.7 Da

IEP (calculated)

5.849

GRAVY (calculated)

-0.448

Length

153 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGY

Best Arabidopsis Sequence Match ( AT1G31340.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGFGLL

Arabidopsis Description

RUB1RUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178W1F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.