Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89210 | Sorghum | cytosol | 23.43 | 51.9 |
| EER96746 | Sorghum | cytosol | 43.43 | 49.67 |
| EER88734 | Sorghum | cytosol | 43.43 | 49.67 |
| KXG38689 | Sorghum | cytosol | 33.71 | 43.07 |
| EER92591 | Sorghum | cytosol | 28.0 | 37.98 |
| EER96363 | Sorghum | cytosol | 28.0 | 37.98 |
| EER99330 | Sorghum | cytosol | 28.57 | 34.97 |
| EES02888 | Sorghum | cytosol | 30.86 | 34.84 |
| EES17768 | Sorghum | cytosol | 30.86 | 34.84 |
| EER97248 | Sorghum | cytosol | 26.86 | 34.56 |
| EER97249 | Sorghum | cytosol | 27.43 | 34.04 |
| KXG35893 | Sorghum | cytosol | 27.43 | 33.8 |
| OQU89356 | Sorghum | cytosol | 26.29 | 33.09 |
| KXG20618 | Sorghum | cytosol, plastid | 49.71 | 31.87 |
| EES11473 | Sorghum | cytosol | 25.71 | 29.41 |
| KXG39742 | Sorghum | cytosol | 23.43 | 28.67 |
| EES01965 | Sorghum | cytosol | 49.71 | 28.52 |
| KXG38267 | Sorghum | cytosol | 25.14 | 27.5 |
| KXG28223 | Sorghum | mitochondrion | 32.57 | 26.51 |
| OQU83265 | Sorghum | cytosol | 30.86 | 24.43 |
| KXG29523 | Sorghum | cytosol | 49.71 | 22.83 |
| KXG29530 | Sorghum | cytosol | 49.71 | 22.83 |
| KXG20644 | Sorghum | cytosol | 49.71 | 22.83 |
| EER90271 | Sorghum | cytosol | 49.71 | 22.83 |
| OQU76939 | Sorghum | cytosol, plastid | 49.71 | 19.12 |
| OQU89357 | Sorghum | cytosol, extracellular | 13.71 | 19.05 |
| EES05681 | Sorghum | cytosol | 49.71 | 18.95 |
| KXG29531 | Sorghum | cytosol | 46.86 | 17.94 |
| PGSC0003DMT400033485 | Potato | cytosol | 14.29 | 12.08 |
| Solyc03g005610.2.1 | Tomato | cytosol | 21.71 | 9.45 |
| GSMUA_Achr9P30160_001 | Banana | cytosol | 1.71 | 3.9 |
Protein Annotations
| EnsemblPlants:OQU90737 | EnsemblPlantsGene:SORBI_3001G036600 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF231 |
| PFAM:PF00240 | PFscan:PS50053 | PRINTS:PR00348 | ProteinID:OQU90737 | ProteinID:OQU90737.1 | SEG:seg |
| SMART:SM00213 | SUPFAM:SSF54236 | UniParc:UPI000B8BB16B | UniProt:A0A1Z5S465 | MapMan:35.1 | : |
Description
hypothetical protein
Coordinates
chr1:-:2718921..2719654
Molecular Weight (calculated)
20064.4 Da
IEP (calculated)
6.503
GRAVY (calculated)
-0.294
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAPQQMWIF VSTLTGETIP LEVLGSDTIN VVKAKIQDRH RLIYDGKWLD DRHTLDHYEI HSGCSLILDL NRGGMPMPIF IKMMTGRSRT ITLDVQNTDT
101: IRTVKAMIYH MDDIPLDQQC LTFDGKQLKD GCSLADNQQR LVYGGRQLQD DHTLADYNIL RFCTLDLLLR LRGGQ
101: IRTVKAMIYH MDDIPLDQQC LTFDGKQLKD GCSLADNQQR LVYGGRQLQD DHTLADYNIL RFCTLDLLLR LRGGQ
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGF
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGF
Arabidopsis Description
UBQ11Polyubiquitin [Source:UniProtKB/TrEMBL;Acc:Q8H0Y0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.