Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89210 | Sorghum | cytosol | 49.3 | 88.61 |
| EER92591 | Sorghum | cytosol | 73.24 | 80.62 |
| EER96363 | Sorghum | cytosol | 73.24 | 80.62 |
| TraesCS1B01G241200.1 | Wheat | cytosol | 78.87 | 80.58 |
| TraesCS5D01G269800.1 | Wheat | cytosol | 75.35 | 79.26 |
| TraesCS5B01G260700.1 | Wheat | cytosol | 74.65 | 78.52 |
| TraesCS6D01G137400.1 | Wheat | cytosol | 73.94 | 77.78 |
| TraesCS6A01G148100.1 | Wheat | cytosol | 73.94 | 77.78 |
| HORVU7Hr1G109650.2 | Barley | cytosol | 76.06 | 77.14 |
| TraesCS7D01G474200.1 | Wheat | cytosol | 75.35 | 76.98 |
| TraesCS7B01G390900.1 | Wheat | cytosol | 75.35 | 76.98 |
| TraesCS7B01G390800.1 | Wheat | cytosol | 75.35 | 76.98 |
| TraesCS7A01G487500.1 | Wheat | cytosol | 75.35 | 76.98 |
| TraesCS6B01G176400.1 | Wheat | cytosol | 72.54 | 76.3 |
| TraesCS7D01G474300.1 | Wheat | cytosol | 74.65 | 76.26 |
| TraesCS1D01G228700.1 | Wheat | cytosol | 74.65 | 76.26 |
| EER97249 | Sorghum | cytosol | 75.35 | 75.89 |
| EER99330 | Sorghum | cytosol | 76.06 | 75.52 |
| EER97248 | Sorghum | cytosol | 70.42 | 73.53 |
| OQU89356 | Sorghum | cytosol | 69.72 | 71.22 |
| HORVU5Hr1G072680.1 | Barley | cytosol | 74.65 | 70.2 |
| TraesCS1A01G227100.1 | Wheat | cytosol | 76.76 | 64.5 |
| KXG39742 | Sorghum | cytosol | 64.79 | 64.34 |
| OQU89357 | Sorghum | cytosol, extracellular | 47.89 | 53.97 |
| EES02888 | Sorghum | cytosol | 57.04 | 52.26 |
| EES17768 | Sorghum | cytosol | 57.04 | 52.26 |
| EER88734 | Sorghum | cytosol | 54.23 | 50.33 |
| EER96746 | Sorghum | cytosol | 54.23 | 50.33 |
| Os07t0489500-00 | Rice | cytosol | 73.24 | 40.94 |
| KXG38267 | Sorghum | cytosol | 40.85 | 36.25 |
| KXG38689 | Sorghum | cytosol | 32.39 | 33.58 |
| KXG20618 | Sorghum | cytosol, plastid | 59.86 | 31.14 |
| EES01965 | Sorghum | cytosol | 60.56 | 28.2 |
| OQU90737 | Sorghum | cytosol | 33.8 | 27.43 |
| KXG29530 | Sorghum | cytosol | 61.97 | 23.1 |
| KXG29523 | Sorghum | cytosol | 61.97 | 23.1 |
| EER90271 | Sorghum | cytosol | 61.97 | 23.1 |
| KXG20644 | Sorghum | cytosol | 61.97 | 23.1 |
| OQU83265 | Sorghum | cytosol | 33.8 | 21.72 |
| KXG28223 | Sorghum | mitochondrion | 32.39 | 21.4 |
| EES05681 | Sorghum | cytosol | 61.97 | 19.17 |
| OQU76939 | Sorghum | cytosol, plastid | 60.56 | 18.9 |
| KXG29531 | Sorghum | cytosol | 59.15 | 18.38 |
| EES11473 | Sorghum | cytosol | 10.56 | 9.8 |
Protein Annotations
| MapMan:17.1.2.1.43 | Gene3D:2.20.28.70 | Gene3D:3.10.20.90 | UniProt:A0A1B6QDB4 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000626 | InterPro:IPR038587 | EnsemblPlants:KXG35893 | ProteinID:KXG35893 |
| ProteinID:KXG35893.1 | InterPro:L40e_sf | PFAM:PF00240 | PFAM:PF01020 | PRINTS:PR00348 | ScanProsite:PS00299 |
| PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF255 | InterPro:Ribosomal_L40e | InterPro:Ribosomal_zn-bd | SMART:SM00213 |
| SMART:SM01377 | EnsemblPlantsGene:SORBI_3002G244600 | SUPFAM:SSF54236 | SUPFAM:SSF57829 | UniParc:UPI0003C6AC54 | InterPro:Ubiquitin |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:63336180..63339375
Molecular Weight (calculated)
16427.1 Da
IEP (calculated)
10.478
GRAVY (calculated)
-0.700
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIGHVKAKI QDKEGVPPDQ QRLIFAGKQL EDDRTLADYN IQKESTVHLV LRLRGGTKSF KFNIPPNLLV LARKYKENKL
101: ICRKCYARLP LRSTNCRKKK CGHNNELREK HKFVSKYGID RE
101: ICRKCYARLP LRSTNCRKKK CGHNNELREK HKFVSKYGID RE
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
Arabidopsis Description
RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.