CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 6
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11473	Sorghum	cytosol	54.95	98.04
EER89210	Sorghum	cytosol	27.47	94.94
EER88734	Sorghum	cytosol	45.42	81.05
EER96746	Sorghum	cytosol	45.42	81.05
EES01965	Sorghum	cytosol	87.55	78.36
AT1G65350.1	Thale cress	cytosol	81.32	69.59
EER92591	Sorghum	cytosol	32.23	68.22
EER96363	Sorghum	cytosol	32.23	68.22
EER99330	Sorghum	cytosol	32.23	61.54
EES17768	Sorghum	cytosol	34.8	61.29
EER97248	Sorghum	cytosol	30.4	61.03
EER97249	Sorghum	cytosol	31.5	60.99
EES02888	Sorghum	cytosol	34.43	60.65
KXG35893	Sorghum	cytosol	31.14	59.86
KXG38689	Sorghum	cytosol	30.04	59.85
OQU89356	Sorghum	cytosol	30.4	59.71
KXG20644	Sorghum	cytosol	83.15	59.58
KXG29530	Sorghum	cytosol	83.15	59.58
KXG29523	Sorghum	cytosol	83.15	59.58
EER90271	Sorghum	cytosol	83.15	59.58
KXG29531	Sorghum	cytosol	86.45	51.64
OQU76939	Sorghum	cytosol, plastid	84.62	50.77
OQU90737	Sorghum	cytosol	31.87	49.71
KXG39742	Sorghum	cytosol	26.01	49.65
EES05681	Sorghum	cytosol	83.15	49.46
Solyc07g064130.1.1	Tomato	nucleus	82.78	49.45
KXG38267	Sorghum	cytosol	25.27	43.12
OQU89357	Sorghum	cytosol, extracellular	19.78	42.86
KXG28223	Sorghum	mitochondrion	32.23	40.93
OQU83265	Sorghum	cytosol	29.3	36.2

Protein Annotations

MapMan:19.2.2.1.1	Gene3D:3.10.20.90	UniProt:A0A194YKY7	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	EnsemblPlants:KXG20618	ProteinID:KXG20618	ProteinID:KXG20618.2	PFAM:PF00240	PRINTS:PR00348
ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF242	SMART:SM00213	EnsemblPlantsGene:SORBI_3010G225300
SUPFAM:SSF54236	UniParc:UPI0009DC855F	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom

Description

hypothetical protein

Coordinates

chr10:-:56833243..56836208

Molecular Weight (calculated)

30518.9 Da

IEP (calculated)

9.992

GRAVY (calculated)

-0.549

Length

273 amino acids

Sequence
(BLAST)

001: MAVTGHGNPP FPRYKSPLPA SDREVTAPPL RRRTKQGSPD RLVKMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL
101: ADYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF
201: VKTLTGKTIT LEVESSDTID NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKD STLHLVLRLR GGQ

Best Arabidopsis Sequence Match ( AT4G02890.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGF

Arabidopsis Description

UBQ14Polyubiquitin 14 [Source:UniProtKB/Swiss-Prot;Acc:Q3E7T8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.