CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G164600.1	Wheat	cytosol	50.11	99.56
EES11473	Sorghum	cytosol	32.97	98.04
EER89210	Sorghum	cytosol	16.48	94.94
KXG20618	Sorghum	cytosol, plastid	50.77	84.62
EES05681	Sorghum	cytosol	83.52	82.79
EER88734	Sorghum	cytosol	27.25	81.05
EER96746	Sorghum	cytosol	27.25	81.05
KXG29530	Sorghum	cytosol	66.81	79.79
KXG29523	Sorghum	cytosol	66.81	79.79
KXG20644	Sorghum	cytosol	66.81	79.79
EER90271	Sorghum	cytosol	66.81	79.79
EES01965	Sorghum	cytosol	52.09	77.7
AT1G65350.1	Thale cress	cytosol	49.23	70.22
HORVU5Hr1G019590.12	Barley	extracellular	50.33	69.6
EER96363	Sorghum	cytosol	19.34	68.22
EER92591	Sorghum	cytosol	19.34	68.22
Solyc07g064130.1.1	Tomato	nucleus	66.59	66.3
Os02t0161900-01	Rice	extracellular, vacuole	68.79	64.67
EER99330	Sorghum	cytosol	19.34	61.54
EES17768	Sorghum	cytosol	20.88	61.29
EER97248	Sorghum	cytosol	18.24	61.03
EER97249	Sorghum	cytosol	18.9	60.99
EES02888	Sorghum	cytosol	20.66	60.65
KXG35893	Sorghum	cytosol	18.9	60.56
KXG38689	Sorghum	cytosol	18.02	59.85
OQU89356	Sorghum	cytosol	18.24	59.71
KXG29531	Sorghum	cytosol	50.33	50.11
OQU90737	Sorghum	cytosol	19.12	49.71
KXG39742	Sorghum	cytosol	15.6	49.65
KXG38267	Sorghum	cytosol	15.16	43.12
OQU89357	Sorghum	cytosol, extracellular	11.87	42.86
KXG28223	Sorghum	mitochondrion	19.34	40.93
OQU83265	Sorghum	cytosol	17.8	36.65

Protein Annotations

MapMan:19.2.2.1.1	Gene3D:3.10.20.90	UniProt:A0A1W0VUI0	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	EnsemblPlants:OQU76939	ProteinID:OQU76939	ProteinID:OQU76939.1	PFAM:PF00240	PRINTS:PR00348
ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR45095	PANTHER:PTHR45095:SF2	SMART:SM00213	EnsemblPlantsGene:SORBI_3010G239500
SUPFAM:SSF54236	UniParc:UPI0009DC8367	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:58144098..58146392

Molecular Weight (calculated)

50747.3 Da

IEP (calculated)

9.382

GRAVY (calculated)

-0.481

Length

455 amino acids

Sequence
(BLAST)

001: MQCNRLSPRG PPASRDPSVC AWVWPSPPPP SLPVYINRHP PLASPQSPIS QSNPVERILL RAKAKEPASP DPLKMQIFVK TLTGKTITLE VESSDTIDNV
101: KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL
201: EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR
301: GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT
401: IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR LRGGQ

Best Arabidopsis Sequence Match ( AT5G20620.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG SF

Arabidopsis Description

UBQ4Polyubiquitin 4 [Source:UniProtKB/Swiss-Prot;Acc:P0CH32]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.