Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| OQU92006 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G23410.1 | OQU92006 | AT2G01950.1 | 19000166 |
| AT2G47110.1 | OQU92006 | AT2G01950.1 | 19000166 |
| AT3G62250.1 | OQU92006 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES02888 | Sorghum | cytosol | 98.71 | 98.71 |
| GSMUA_Achr8P22260_001 | Banana | cytosol | 96.77 | 95.54 |
| GSMUA_Achr3P08430_001 | Banana | cytosol | 96.77 | 95.54 |
| EER89210 | Sorghum | cytosol | 48.39 | 94.94 |
| KRH11776 | Soybean | nucleus | 94.84 | 94.84 |
| GSMUA_AchrUn_... | Banana | cytosol | 95.48 | 94.27 |
| VIT_17s0119g00050.t01 | Wine grape | cytosol | 94.84 | 94.23 |
| Solyc12g098940.1.1 | Tomato | cytosol, nucleus | 94.84 | 94.23 |
| PGSC0003DMT400011939 | Potato | cytosol | 94.84 | 94.23 |
| KRH74571 | Soybean | cytosol | 94.19 | 94.19 |
| KRH69588 | Soybean | nucleus | 94.19 | 94.19 |
| VIT_08s0032g00900.t01 | Wine grape | cytosol | 94.19 | 93.59 |
| PGSC0003DMT400013321 | Potato | cytosol | 94.19 | 93.59 |
| KRH36782 | Soybean | nucleus | 93.55 | 93.55 |
| Solyc01g056940.2.1 | Tomato | nucleus | 93.55 | 92.95 |
| CDY25100 | Canola | cytosol | 92.9 | 91.72 |
| AT2G47110.1 | Thale cress | cytosol | 92.9 | 91.72 |
| CDX67885 | Canola | cytosol | 92.9 | 91.72 |
| CDX76623 | Canola | cytosol | 92.9 | 91.72 |
| CDX83344 | Canola | cytosol | 92.9 | 91.72 |
| CDX93983 | Canola | cytosol | 92.9 | 91.72 |
| CDY11410 | Canola | cytosol | 92.9 | 91.72 |
| CDY50916 | Canola | cytosol | 92.9 | 91.72 |
| CDY66301 | Canola | cytosol | 92.9 | 91.72 |
| AT3G62250.1 | Thale cress | cytosol | 92.26 | 91.08 |
| CDY12472 | Canola | cytosol | 90.32 | 89.74 |
| CDY25783 | Canola | cytosol | 90.32 | 89.74 |
| CDY44146 | Canola | cytosol | 90.32 | 89.74 |
| AT1G23410.1 | Thale cress | cytosol | 89.68 | 89.1 |
| CDY04715 | Canola | cytosol | 89.68 | 89.1 |
| VIT_07s0005g02160.t01 | Wine grape | cytosol, plastid | 94.84 | 78.61 |
| Solyc12g099030.1.1 | Tomato | plastid | 94.84 | 77.37 |
| PGSC0003DMT400011737 | Potato | cytosol | 90.32 | 77.35 |
| EER96363 | Sorghum | cytosol | 54.19 | 65.12 |
| EER92591 | Sorghum | cytosol | 54.19 | 65.12 |
| EER97248 | Sorghum | cytosol | 52.9 | 60.29 |
| OQU89356 | Sorghum | cytosol | 52.26 | 58.27 |
| EER97249 | Sorghum | cytosol | 52.9 | 58.16 |
| EER99330 | Sorghum | cytosol | 53.55 | 58.04 |
| KXG35893 | Sorghum | cytosol | 52.26 | 57.04 |
| EER96746 | Sorghum | cytosol | 55.48 | 56.21 |
| EER88734 | Sorghum | cytosol | 55.48 | 56.21 |
| KXG38267 | Sorghum | cytosol | 56.13 | 54.38 |
| KXG39742 | Sorghum | cytosol | 42.58 | 46.15 |
| OQU89357 | Sorghum | cytosol, extracellular | 31.61 | 38.89 |
| KXG38689 | Sorghum | cytosol | 32.9 | 37.23 |
| KXG20618 | Sorghum | cytosol, plastid | 61.29 | 34.8 |
| EES01965 | Sorghum | cytosol | 61.29 | 31.15 |
| OQU90737 | Sorghum | cytosol | 34.84 | 30.86 |
| KXG29523 | Sorghum | cytosol | 61.29 | 24.93 |
| KXG20644 | Sorghum | cytosol | 61.29 | 24.93 |
| EER90271 | Sorghum | cytosol | 61.29 | 24.93 |
| KXG29530 | Sorghum | cytosol | 61.29 | 24.93 |
| OQU83265 | Sorghum | cytosol | 34.84 | 24.43 |
| KXG28223 | Sorghum | mitochondrion | 31.61 | 22.79 |
| OQU76939 | Sorghum | cytosol, plastid | 61.29 | 20.88 |
| EES05681 | Sorghum | cytosol | 61.29 | 20.7 |
| KXG29531 | Sorghum | cytosol | 59.35 | 20.13 |
| EES11473 | Sorghum | cytosol | 12.26 | 12.42 |
Protein Annotations
| MapMan:17.1.3.1.29 | Gene3D:2.20.25.660 | Gene3D:3.10.20.90 | EntrezGene:8080919 | UniProt:C5Z0N6 | EnsemblPlants:EES17768 |
| ProteinID:EES17768 | ProteinID:EES17768.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR000626 | InterPro:IPR038582 | PFAM:PF00240 | PFAM:PF01599 | PRINTS:PR00348 | ScanProsite:PS00299 |
| PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF235 | InterPro:Ribosomal_S27a | InterPro:Ribosomal_zn-bd | InterPro:S27a-like_sf |
| SMART:SM00213 | SMART:SM01402 | EnsemblPlantsGene:SORBI_3009G054800 | SUPFAM:SSF54236 | SUPFAM:SSF57829 | unigene:Sbi.17785 |
| UniParc:UPI0000000567 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | RefSeq:XP_002439338.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:+:5545518..5546344
Molecular Weight (calculated)
17682.6 Da
IEP (calculated)
10.458
GRAVY (calculated)
-0.708
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDD ATGKVTRLRK ECPNTECGAG VFMANHFDRH YCGKCGLTYV YNQKA
101: AVLQFYKVDD ATGKVTRLRK ECPNTECGAG VFMANHFDRH YCGKCGLTYV YNQKA
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE
Arabidopsis Description
RPS27ABUBQ6 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.