Factsheet for VIT_17s0119g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23410.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166
AT2G47110.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166
AT3G62250.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011939	Potato	cytosol	99.36	99.36
VIT_08s0032g00900.t01	Wine grape	cytosol	98.72	98.72
PGSC0003DMT400013321	Potato	cytosol	98.08	98.08
Solyc01g056940.2.1	Tomato	nucleus	97.44	97.44
KRH11776	Soybean	nucleus	96.15	96.77
GSMUA_Achr8P22260_001	Banana	cytosol	96.79	96.18
GSMUA_Achr3P08430_001	Banana	cytosol	96.79	96.18
KRH74571	Soybean	cytosol	95.51	96.13
KRH69588	Soybean	nucleus	95.51	96.13
KRH36782	Soybean	nucleus	94.87	95.48
CDX83344	Canola	cytosol	95.51	94.9
CDY50916	Canola	cytosol	95.51	94.9
GSMUA_AchrUn_...	Banana	cytosol	95.51	94.9
TraesCS1A01G397400.1	Wheat	cytosol	94.23	94.84
Os05t0160200-01	Rice	nucleus	94.23	94.84
TraesCS1B01G425700.1	Wheat	cytosol	94.23	94.84
EES17768	Sorghum	cytosol	94.23	94.84
TraesCS1D01G405400.1	Wheat	cytosol	94.23	94.84
AT2G47110.1	Thale cress	cytosol	94.87	94.27
CDX67885	Canola	cytosol	94.87	94.27
CDY66301	Canola	cytosol	94.87	94.27
CDY25100	Canola	cytosol	94.87	94.27
CDX76623	Canola	cytosol	94.87	94.27
CDX93983	Canola	cytosol	94.87	94.27
CDY11410	Canola	cytosol	94.87	94.27
EES02888	Sorghum	cytosol	93.59	94.19
TraesCS1D01G109800.1	Wheat	cytosol	93.59	94.19
TraesCS1B01G130900.1	Wheat	cytosol	93.59	94.19
TraesCS1A01G397500.1	Wheat	golgi, unclear	93.59	94.19
TraesCS1A01G105400.1	Wheat	cytosol	93.59	94.19
Os01t0328400-01	Rice	nucleus	93.59	94.19
AT3G62250.1	Thale cress	cytosol	94.23	93.63
CDY12472	Canola	cytosol	91.03	91.03
CDY25783	Canola	cytosol	91.03	91.03
CDY44146	Canola	cytosol	91.03	91.03
CDY04715	Canola	cytosol	90.38	90.38
AT1G23410.1	Thale cress	cytosol	90.38	90.38
VIT_07s0005g02160.t01	Wine grape	cytosol, plastid	98.72	82.35
HORVU1Hr1G023660.1	Barley	extracellular	93.59	81.56
PGSC0003DMT400011737	Potato	cytosol	92.31	79.56
VIT_08s0007g03030.t01	Wine grape	cytosol	53.85	65.62
VIT_16s0098g01190.t01	Wine grape	cytosol	53.85	65.62
VIT_19s0085g00040.t01	Wine grape	cytosol, extracellular	55.77	56.13
Zm00001d032616_P001	Maize	plastid	53.85	53.85
HORVU1Hr1G087690.8	Barley	nucleus	73.72	42.91
VIT_19s0177g00040.t01	Wine grape	cytosol	61.54	25.2
VIT_14s0036g01020.t01	Wine grape	cytosol	61.54	22.02
VIT_19s0177g00070.t01	Wine grape	cytosol	61.54	21.01
VIT_14s0036g00990.t01	Wine grape	cytosol	61.54	17.84
VIT_14s0036g00930.t01	Wine grape	extracellular	61.54	9.65

Protein Annotations

EntrezGene:100259511	wikigene:100259511	MapMan:17.1.3.1.29	Gene3D:2.20.25.660	Gene3D:3.10.20.90	UniProt:A5C8S5
EMBL:AM486252	ProteinID:CAN75420	ProteinID:CAN75420.1	ProteinID:CCB58929	ProteinID:CCB58929.1	EMBL:FN596263
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038582
EntrezGene:LOC100259511	wikigene:LOC100259511	PFAM:PF00240	PFAM:PF01599	PRINTS:PR00348	ScanProsite:PS00299
PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF257	InterPro:Ribosomal_S27a	InterPro:Ribosomal_zn-bd	InterPro:S27a-like_sf
SMART:SM00213	SMART:SM01402	SUPFAM:SSF54236	SUPFAM:SSF57829	TIGR:TC54697	UniParc:UPI0001522844
InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	ArrayExpress:VIT_17s0119g00050	EnsemblPlantsGene:VIT_17s0119g00050
EnsemblPlants:VIT_17s0119g00050.t01	unigene:Vvi.11150	RefSeq:XP_002266750	RefSeq:XP_002266750.1	RefSeq:XP_003634320	RefSeq:XP_003634320.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:13269693..13270304

Molecular Weight (calculated)

17718.6 Da

IEP (calculated)

10.438

GRAVY (calculated)

-0.775

Length

156 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKKKKVKL
101: AVLQFYKVDD SGKVQRLRKE CPNSECGAGT FMANHFDRHY CGKCGLTYVY QKAGGD

Best Arabidopsis Sequence Match ( AT2G47110.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE

Arabidopsis Description

RPS27ABUBQ6 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.