Factsheet for VIT_14s0036g00930.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1
extracellular 3
endoplasmic reticulum 4
vacuole 4
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0177g00070.t01	Wine grape	cytosol	45.83	99.78
VIT_14s0036g01020.t01	Wine grape	cytosol	38.19	87.16
VIT_14s0036g00990.t01	Wine grape	cytosol	46.03	85.13
VIT_19s0085g00040.t01	Wine grape	cytosol, extracellular	12.46	80.0
VIT_19s0177g00040.t01	Wine grape	cytosol	30.55	79.79
KRH19453	Soybean	cytosol	30.45	79.53
VIT_08s0007g03030.t01	Wine grape	cytosol	9.05	70.31
VIT_16s0098g01190.t01	Wine grape	cytosol	9.05	70.31
VIT_17s0119g00050.t01	Wine grape	cytosol	9.65	61.54
VIT_08s0032g00900.t01	Wine grape	cytosol	9.55	60.9
VIT_07s0005g02160.t01	Wine grape	cytosol, plastid	10.05	53.48

Protein Annotations

EntrezGene:100254515	wikigene:100254515	EntrezGene:100259635	wikigene:100259635	MapMan:19.2.2.1.1	Gene3D:3.10.20.90
ProteinID:AAU09789	ProteinID:AAU09789.1	EMBL:AY684128	ProteinID:CCB47636	ProteinID:CCB47636.1	UniProt:F6H5Z7
EMBL:FN595241	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	EntrezGene:LOC100254515
wikigene:LOC100254515	EntrezGene:LOC100259635	wikigene:LOC100259635	PFAM:PF00240	PRINTS:PR00348	ScanProsite:PS00299
PFscan:PS50053	PANTHER:PTHR45095	PANTHER:PTHR45095:SF2	SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI0002108CF4
InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	ArrayExpress:VIT_14s0036g00930	EnsemblPlantsGene:VIT_14s0036g00930
EnsemblPlants:VIT_14s0036g00930.t01	RefSeq:XP_002267206	RefSeq:XP_002267206.1	RefSeq:XP_002267452	RefSeq:XP_002267452.1	RefSeq:XP_003633702
RefSeq:XP_003633702.1	:	:	:	:	:

Description

No Description!

Coordinates

chr14:-:11326693..11337173

Molecular Weight (calculated)

111559.0 Da

IEP (calculated)

8.724

GRAVY (calculated)

-0.407

Length

995 amino acids

Sequence
(BLAST)

001: MFVHLGFFMV FGRMQIFVKT LTGKTITLEV ESSDTIDNVK AKIQDKEGIP PDQQRLIFAG KQLEDGRTLA DYNIQKESTL HLVLRLRGGM QIFVKTLTGK
101: TITLEVESSD TIDNVKAKIQ DKEGIPPDQQ RLIFAGKQLE DGRTLADYNI QKESTLHLVL RLRGGMQIFV KTLTGKTITL EVESSDTIDN VKAKIQDKEG
201: IPPDQQRLIF AGKQLEDGRT LADYNIQKES TLHLVLRLRG GMQIFVKTLT GKTITLEVES SDTIDNVKAK IQDKEGIPPD QQRLIFAGKQ LEDGRTLADY
301: NIQKESTLHL VLRLRGGMQI FVKTLTGKTI TLEVESSDTI DNVKAKIQDK EGIPPDQQRL IFAGKQLEDG RTLADYNIQK ESTLHLVLRL RGGMQIFVKT
401: LTGKTITLEV ESSDTIDNVK AKIQDKEGIP PDQQRLIFAG KQLEDGRTLA DYNIQKESTL HLVLRLRGGM QIFVKTLTGK TITLEVESSD TIDNVKAKIQ
501: DKEGIPPDQQ RLIFAGKQLE DGRTLADYNI QKESTLHLVL RLRGGDPMDV KNDFLPSPNL PTSTTINIKY FLSSHHSKRL CGLPEKQSSF LCLFIDHSLF
601: PNRSLFPFKM QIFVKTLTGK TITLEVESSD TIDNVKAKIQ DKEGIPPDQQ RLIFAGKQLE DGRTLADYNI QKESTLHLVL RLRGGMQIFV KTLTGKTITL
701: EVESSDTIDN VKAKIQDKEG IPPDQQRLIF AGKQLEDGRT LADYNIQKES TLHLVLRLRG GMQIFVKTLT GKTITLEVES SDTIDNVKAK IQDKEGIPPD
801: QQRLIFAGKQ LEDGRTLADY NIQKESTLHL VLRLRGGMQI FVKTLTGKTI TLEVESSDTI DNVKAKIQDK EGIPPDQQRL IFAGKQLEDG RTLADYNIQK
901: ESTLHLVLRL RGGMQIFVKT LTGKTITLEV ESSDTIDNVK AKIQDKEGIP PDQQRLIFAG KQLEDGRTLA DYNIQKESTL HLVLRLRGGS GPSGF

Best Arabidopsis Sequence Match ( AT4G05320.2 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVESS
401: DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGF

Arabidopsis Description

UBQ10Polyubiquitin 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8H159]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.