Factsheet for VIT_16s0098g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36170.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166
AT3G52590.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G52590.1	Thale cress	cytosol	99.22	99.22
AT2G36170.1	Thale cress	cytosol	99.22	99.22
VIT_08s0007g03030.t01	Wine grape	cytosol	99.22	99.22
Solyc03g082570.2.1	Tomato	cytosol	98.44	98.44
Solyc01g096290.2.1	Tomato	cytosol	98.44	98.44
PGSC0003DMT400047686	Potato	cytosol	98.44	98.44
PGSC0003DMT400031900	Potato	cytosol	98.44	98.44
Solyc08g083120.2.1	Tomato	cytosol, nucleus	98.44	98.44
PGSC0003DMT400013958	Potato	cytosol	98.44	98.44
PGSC0003DMT400000364	Potato	cytosol	98.44	98.44
GSMUA_Achr8P32920_001	Banana	cytosol	98.44	98.44
GSMUA_Achr8P07770_001	Banana	cytosol, unclear	98.44	98.44
GSMUA_Achr5P00970_001	Banana	cytosol	98.44	98.44
TraesCS4A01G306500.1	Wheat	cytosol	97.66	96.9
TraesCS4B01G008400.1	Wheat	cytosol	97.66	96.9
TraesCS4D01G006900.1	Wheat	cytosol	97.66	96.9
Zm00001d005334_P001	Maize	cytosol, plastid	97.66	96.9
EER96363	Sorghum	cytosol	97.66	96.9
EER92591	Sorghum	cytosol	97.66	96.9
Solyc08g008590.2.1	Tomato	cytosol, nucleus	97.66	91.91
PGSC0003DMT400015022	Potato	cytosol	92.19	90.08
HORVU4Hr1G001170.5	Barley	cytosol	74.22	86.36
HORVU4Hr1G065100.3	Barley	cytosol	75.0	85.71
TraesCS4B01G233100.1	Wheat	cytosol	97.66	81.17
TraesCS4A01G077000.1	Wheat	cytosol	97.66	79.11
TraesCS4D01G234300.1	Wheat	cytosol	97.66	79.11
KRG99541	Soybean	cytosol	58.59	67.57
Solyc06g053210.2.1	Tomato	cytosol	88.28	60.11
VIT_17s0119g00050.t01	Wine grape	cytosol	65.62	53.85
VIT_08s0032g00900.t01	Wine grape	cytosol	64.84	53.21
VIT_19s0085g00040.t01	Wine grape	cytosol, extracellular	64.06	52.9
VIT_07s0005g02160.t01	Wine grape	cytosol, plastid	65.62	44.92
VIT_19s0177g00040.t01	Wine grape	cytosol	68.75	23.1
VIT_14s0036g01020.t01	Wine grape	cytosol	68.75	20.18
VIT_19s0177g00070.t01	Wine grape	cytosol	70.31	19.69
VIT_14s0036g00990.t01	Wine grape	cytosol	70.31	16.73
VIT_14s0036g00930.t01	Wine grape	extracellular	70.31	9.05

Protein Annotations

EntrezGene:100253716	wikigene:100253716	MapMan:17.1.2.1.43	Gene3D:2.20.28.70	Gene3D:3.10.20.90	ProteinID:ADP07945
ProteinID:ADP07945.1	EMBL:BN000705	ProteinID:CAI56329	ProteinID:CAI56329.1	ProteinID:CBI23063	ProteinID:CBI23063.3
UniProt:E0CVA2	EMBL:FN595247	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
EMBL:GU585868	InterPro:IPR000626	InterPro:IPR038587	InterPro:L40e_sf	EntrezGene:LOC100253716	wikigene:LOC100253716
PFAM:PF00240	PFAM:PF01020	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666
PANTHER:PTHR10666:SF255	InterPro:Ribosomal_L40e	InterPro:Ribosomal_zn-bd	SMART:SM00213	SMART:SM01377	SUPFAM:SSF54236
SUPFAM:SSF57829	TIGR:TC53702	UniParc:UPI00015CB684	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS
InterPro:Ubiquitin_dom	ArrayExpress:VIT_16s0098g01190	EnsemblPlantsGene:VIT_16s0098g01190	EnsemblPlants:VIT_16s0098g01190.t01	unigene:Vvi.7131	RefSeq:XP_002273568
RefSeq:XP_002273568.1	:	:	:	:	:

Description

No Description!

Coordinates

chr16:-:21447273..21450332

Molecular Weight (calculated)

14731.2 Da

IEP (calculated)

10.606

GRAVY (calculated)

-0.680

Length

128 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMQLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Best Arabidopsis Sequence Match ( AT3G52590.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.