Factsheet for VIT_14s0036g00990.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20644	Sorghum	cytosol	70.45	99.48
AT1G65350.1	Thale cress	cytosol	55.58	93.73
HORVU6Hr1G026200.5	Barley	cytosol	42.75	91.63
VIT_14s0036g01020.t01	Wine grape	cytosol	72.3	89.22
VIT_19s0177g00070.t01	Wine grape	cytosol	70.82	83.37
VIT_19s0085g00040.t01	Wine grape	cytosol, extracellular	23.05	80.0
VIT_19s0177g00040.t01	Wine grape	cytosol	56.32	79.53
Zm00001d053838_P005	Maize	cytosol, plastid	71.19	71.59
VIT_08s0007g03030.t01	Wine grape	cytosol	16.73	70.31
VIT_16s0098g01190.t01	Wine grape	cytosol	16.73	70.31
VIT_17s0119g00050.t01	Wine grape	cytosol	17.84	61.54
VIT_08s0032g00900.t01	Wine grape	cytosol	17.66	60.9
VIT_07s0005g02160.t01	Wine grape	cytosol, plastid	18.59	53.48
VIT_14s0036g00930.t01	Wine grape	extracellular	85.13	46.03

Protein Annotations

EntrezGene:100261369	wikigene:100261369	MapMan:19.2.2.1.1	Gene3D:3.10.20.90	ProteinID:AAU09789	ProteinID:AAU09789.1
EMBL:AM445684	EMBL:AY684128	ProteinID:CAN71997	ProteinID:CAN71997.1	ProteinID:CCB47634	ProteinID:CCB47634.1
UniProt:F6H5Z5	EMBL:FN595241	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626
EntrezGene:LOC100261369	wikigene:LOC100261369	PFAM:PF00240	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053
PANTHER:PTHR10666	PANTHER:PTHR10666:SF240	SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI0001985AEC	InterPro:Ubiquitin
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	ArrayExpress:VIT_14s0036g00990	EnsemblPlantsGene:VIT_14s0036g00990	EnsemblPlants:VIT_14s0036g00990.t01
RefSeq:XP_002267017	RefSeq:XP_002267017.1	:	:	:	:

Description

No Description!

Coordinates

chr14:+:11481165..11482783

Molecular Weight (calculated)

60297.9 Da

IEP (calculated)

8.371

GRAVY (calculated)

-0.459

Length

538 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKDSTLHLV LRLRGGMQIF VKTLTRKTIT LEVESSDTTD
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLAHYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVESS
401: DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID NVKAKIQDKE GIPPDQQRLI
501: FAGKQLEDGR TLVDYNIQKE STLHLVLRLR GGDGGCSW

Best Arabidopsis Sequence Match ( AT4G05320.2 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVESS
401: DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGF

Arabidopsis Description

UBQ10Polyubiquitin 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8H159]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.