Factsheet for VIT_19s0085g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31340.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G494400.1	Wheat	cytosol	96.77	98.04
EER88734	Sorghum	cytosol	96.77	98.04
EER96746	Sorghum	cytosol	96.77	98.04
TraesCS7B01G413800.1	Wheat	cytosol	96.77	98.04
TraesCS7A01G506300.1	Wheat	cytosol, plastid	96.77	98.04
TraesCS5D01G231400.1	Wheat	cytosol	96.77	98.04
TraesCS5B01G222800.1	Wheat	cytosol	96.77	98.04
Os06t0650100-01	Rice	cytosol, extracellular, plasma membrane	96.77	98.04
Solyc10g005560.2.1	Tomato	cytosol, nucleus	96.77	97.4
PGSC0003DMT400029234	Potato	cytosol	96.77	97.4
KRH13718	Soybean	cytosol, endoplasmic reticulum, nucleus	96.13	96.75
KRH43738	Soybean	cytosol	96.13	96.75
CDY50712	Canola	cytosol	96.77	96.15
AT1G31340.1	Thale cress	cytosol	96.77	96.15
GSMUA_Achr7P26310_001	Banana	cytosol	95.48	94.87
GSMUA_Achr3P30150_001	Banana	cytosol	95.48	94.27
Zm00001d036717_P001	Maize	cytosol	89.03	90.2
HORVU7Hr1G029150.2	Barley	cytosol	88.39	75.27
HORVU7Hr1G029070.1	Barley	cytosol	87.1	71.81
HORVU7Hr1G029100.1	Barley	cytosol	88.39	71.73
HORVU3Hr1G014150.2	Barley	cytosol	89.68	68.47
HORVU3Hr1G014180.3	Barley	cytosol	89.68	68.47
VIT_08s0007g03030.t01	Wine grape	cytosol	52.9	64.06
VIT_16s0098g01190.t01	Wine grape	cytosol	52.9	64.06
VIT_17s0119g00050.t01	Wine grape	cytosol	56.13	55.77
VIT_08s0032g00900.t01	Wine grape	cytosol	55.48	55.13
VIT_07s0005g02160.t01	Wine grape	cytosol, plastid	56.13	46.52
VIT_19s0177g00040.t01	Wine grape	cytosol	80.0	32.55
VIT_14s0036g01020.t01	Wine grape	cytosol	80.0	28.44
VIT_19s0177g00070.t01	Wine grape	cytosol	80.0	27.13
VIT_14s0036g00990.t01	Wine grape	cytosol	80.0	23.05
VIT_14s0036g00930.t01	Wine grape	extracellular	80.0	12.46

Protein Annotations

EntrezGene:100241051	wikigene:100241051	MapMan:19.2.2.3.1	Gene3D:3.10.20.90	ProteinID:CBI24204	ProteinID:CBI24204.3
UniProt:D7T0Y4	EMBL:FN595503	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626
EntrezGene:LOC100241051	wikigene:LOC100241051	InterPro:Nedd8-like	PFAM:PF00240	PRINTS:PR00348	ScanProsite:PS00299
PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF230	SMART:SM00213	SUPFAM:SSF54236	TIGR:TC60513
UniParc:UPI00015CB32E	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	ArrayExpress:VIT_19s0085g00040
EnsemblPlantsGene:VIT_19s0085g00040	EnsemblPlants:VIT_19s0085g00040.t01	unigene:Vvi.3131	RefSeq:XP_002265864	RefSeq:XP_002265864.1	SEG:seg

Description

No Description!

Coordinates

chr19:+:22340611..22350348

Molecular Weight (calculated)

17196.8 Da

IEP (calculated)

5.849

GRAVY (calculated)

-0.448

Length

155 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLGDDK TARDYNIEGG SVLHLVLALR GGGSA

Best Arabidopsis Sequence Match ( AT1G31340.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGFGLL

Arabidopsis Description

RUB1RUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178W1F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.