Factsheet for VIT_19s0177g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29523	Sorghum	cytosol	83.15	99.74
TraesCS6B01G164600.1	Wheat	cytosol	49.89	99.56
EES05681	Sorghum	cytosol	99.78	99.35
TraesCS2D01G405500.1	Wheat	cytosol	49.02	98.25
TraesCS2A01G408200.1	Wheat	cytosol	34.57	96.93
TraesCS6A01G087100.1	Wheat	cytosol	48.36	96.51
AT1G65350.1	Thale cress	cytosol	65.43	93.73
HORVU5Hr1G019590.12	Barley	extracellular	66.74	92.71
Solyc07g064130.1.1	Tomato	nucleus	82.93	82.93
VIT_19s0085g00040.t01	Wine grape	cytosol, extracellular	27.13	80.0
PGSC0003DMT400027156	Potato	cytosol	66.52	79.79
VIT_19s0177g00040.t01	Wine grape	cytosol	66.52	79.79
KRH50099	Soybean	cytosol, endoplasmic reticulum, nucleus	83.37	71.48
KRH20401	Soybean	cytosol	83.37	71.48
VIT_14s0036g00990.t01	Wine grape	cytosol	83.37	70.82
VIT_08s0007g03030.t01	Wine grape	cytosol	19.69	70.31
VIT_16s0098g01190.t01	Wine grape	cytosol	19.69	70.31
VIT_14s0036g01020.t01	Wine grape	cytosol	66.52	69.72
Os02t0161900-01	Rice	extracellular, vacuole	66.52	62.81
VIT_17s0119g00050.t01	Wine grape	cytosol	21.01	61.54
VIT_08s0032g00900.t01	Wine grape	cytosol	20.79	60.9
Zm00001d015327_P001	Maize	cytosol	65.86	56.47
VIT_07s0005g02160.t01	Wine grape	cytosol, plastid	21.01	51.34
KRH20404	Soybean	cytosol	49.89	49.89
VIT_14s0036g00930.t01	Wine grape	extracellular	99.78	45.83

Protein Annotations

EntrezGene:104877307	MapMan:19.2.2.1.1	Gene3D:3.10.20.90	UniProt:A5AEI5	ProteinID:AAU09789	ProteinID:AAU09789.1
EMBL:AM424545	EMBL:AM466823	EMBL:AY684128	ProteinID:CAN64480	ProteinID:CAN64480.1	ProteinID:CAN77120
ProteinID:CAN77120.1	ProteinID:CCB48795	ProteinID:CCB48795.1	ProteinID:CCB48796	ProteinID:CCB48796.1	EMBL:FN595498
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	PFAM:PF00240	PRINTS:PR00348
ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR45095	PANTHER:PTHR45095:SF2	SMART:SM00213	SUPFAM:SSF54236
TIGR:TC51750	UniParc:UPI00000AC751	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom
ArrayExpress:VIT_19s0177g00070	EnsemblPlantsGene:VIT_19s0177g00070	EnsemblPlants:VIT_19s0177g00070.t01	unigene:Vvi.26411	RefSeq:XP_002282119	RefSeq:XP_002282119.1
RefSeq:XP_010644404.1	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:5915872..5917362

Molecular Weight (calculated)

51208.9 Da

IEP (calculated)

7.882

GRAVY (calculated)

-0.438

Length

457 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVESS
401: DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGF

Best Arabidopsis Sequence Match ( AT4G05320.2 )
(BLAST)

Arabidopsis Description

UBQ10Polyubiquitin 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8H159]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.