Factsheet for VIT_19s0177g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G026200.5	Barley	cytosol	59.84	90.84
VIT_19s0085g00040.t01	Wine grape	cytosol, extracellular	32.55	80.0
KXG20644	Sorghum	cytosol	79.79	79.79
AT1G65350.1	Thale cress	cytosol	58.79	70.22
VIT_14s0036g01020.t01	Wine grape	cytosol	79.79	69.72
VIT_08s0007g03030.t01	Wine grape	cytosol	23.1	68.75
VIT_16s0098g01190.t01	Wine grape	cytosol	23.1	68.75
VIT_19s0177g00070.t01	Wine grape	cytosol	79.79	66.52
VIT_17s0119g00050.t01	Wine grape	cytosol	25.2	61.54
VIT_08s0032g00900.t01	Wine grape	cytosol	24.93	60.9
Zm00001d053838_P005	Maize	cytosol, plastid	79.79	56.82
VIT_14s0036g00990.t01	Wine grape	cytosol	79.53	56.32
VIT_07s0005g02160.t01	Wine grape	cytosol, plastid	25.2	51.34
VIT_14s0036g00930.t01	Wine grape	extracellular	79.79	30.55

Protein Annotations

EntrezGene:100267431	MapMan:19.2.2.1.1	Gene3D:3.10.20.90	ProteinID:AAU09789	ProteinID:AAU09789.1	EMBL:AM466823
EMBL:AY684128	ProteinID:CAN77120	ProteinID:CAN77120.1	ProteinID:CCB48795	ProteinID:CCB48795.1	UniProt:F6H9A2
EMBL:FN595498	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	PFAM:PF00240
PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR45095	PANTHER:PTHR45095:SF2	SMART:SM00213
SUPFAM:SSF54236	TIGR:TC54117	TIGR:TC57081	UniParc:UPI00000A79D5	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	ArrayExpress:VIT_19s0177g00040	EnsemblPlantsGene:VIT_19s0177g00040	EnsemblPlants:VIT_19s0177g00040.t01	unigene:Vvi.13301
unigene:Vvi.24517	RefSeq:XP_002282037	RefSeq:XP_002282037.1	RefSeq:XP_010644407.1	:	:

Description

No Description!

Coordinates

chr19:+:5890903..5892265

Molecular Weight (calculated)

42701.6 Da

IEP (calculated)

7.853

GRAVY (calculated)

-0.436

Length

381 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG F

Best Arabidopsis Sequence Match ( AT4G05320.1 )
(BLAST)

Arabidopsis Description

UBQ10Polyubiquitin 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8H159]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.