Factsheet for VIT_14s0036g01020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0085g00040.t01	Wine grape	cytosol, extracellular	28.44	80.0
VIT_19s0177g00040.t01	Wine grape	cytosol	69.72	79.79
VIT_14s0036g00990.t01	Wine grape	cytosol	89.22	72.3
VIT_08s0007g03030.t01	Wine grape	cytosol	20.18	68.75
VIT_16s0098g01190.t01	Wine grape	cytosol	20.18	68.75
VIT_19s0177g00070.t01	Wine grape	cytosol	69.72	66.52
VIT_17s0119g00050.t01	Wine grape	cytosol	22.02	61.54
VIT_08s0032g00900.t01	Wine grape	cytosol	21.79	60.9
VIT_07s0005g02160.t01	Wine grape	cytosol, plastid	22.94	53.48
VIT_14s0036g00930.t01	Wine grape	extracellular	87.16	38.19

Protein Annotations

EntrezGene:100252768	wikigene:100252768	MapMan:19.2.2.1.1	Gene3D:3.10.20.90	ProteinID:AAU09789	ProteinID:AAU09789.1
EMBL:AY684128	ProteinID:CCB47631	ProteinID:CCB47631.1	UniProt:F6H5Z2	EMBL:FN595241	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	EntrezGene:LOC100252768	wikigene:LOC100252768	PFAM:PF00240
PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR45095	PANTHER:PTHR45095:SF2	SMART:SM00213
SUPFAM:SSF54236	UniParc:UPI0002108CF1	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom
ArrayExpress:VIT_14s0036g01020	EnsemblPlantsGene:VIT_14s0036g01020	EnsemblPlants:VIT_14s0036g01020.t01	unigene:Vvi.18259	unigene:Vvi.23657	RefSeq:XP_002266370
RefSeq:XP_002266370.1	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:11517308..11520581

Molecular Weight (calculated)

48747.0 Da

IEP (calculated)

9.107

GRAVY (calculated)

-0.395

Length

436 amino acids

Sequence
(BLAST)

001: MIVDKIPTKA FLKSSQSLAA EESDWGTVKV GIVCAYVVYR GRENGRKIQN FTLMQIFVKT LTGKTITLEV ESSDTIDNVK AKIQDKEGIP PDQQRLIFAG
101: KQLEDGRTLA DYNIQKESTL HLVLRLRGGM QIFVKTLTGK TITLEVESSD TIDNVKAKIQ DKEGIPPDQQ RLIFAGKQLE DGRTLADYNI QKESTLHLVL
201: RLRGGMQIFV KTLTGKTITL EVESSDTIDN VKAKIQDKEG IPPDQQRLIF AGKQLEDGRT LADYNIQKES TLHLVLRLRG GMQIFVKTLT GKTITLEVES
301: SDTIDNVKAK IQDKEGIPPD QQRLIFAGKQ LEDGRTLADY NIQKESTLHL VLRLRGGMQI FVKTLTGKTI TLEVESSDTI DNVKAKIQDK EGIPPDQQRL
401: IFAGKQLEDG RTLADYNIQK ESTLHLVLRL RGGSGF

Best Arabidopsis Sequence Match ( AT5G20620.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG SF

Arabidopsis Description

UBQ4Polyubiquitin 4 [Source:UniProtKB/Swiss-Prot;Acc:P0CH32]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.