Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G02890.3 | Thale cress | cytosol | 93.42 | 97.7 |
| TraesCS6B01G164600.1 | Wheat | cytosol | 69.91 | 97.38 |
| TraesCS2A01G408200.1 | Wheat | cytosol | 49.22 | 96.32 |
| TraesCS2D01G405500.1 | Wheat | cytosol | 68.65 | 96.05 |
| TraesCS6A01G087100.1 | Wheat | cytosol | 67.71 | 94.32 |
| TraesCS6B01G148000.2 | Wheat | cytosol | 69.91 | 93.7 |
| AT1G55060.1 | Thale cress | cytosol | 66.14 | 91.74 |
| HORVU5Hr1G019590.12 | Barley | extracellular | 93.73 | 90.88 |
| HORVU6Hr1G026200.5 | Barley | cytosol | 69.91 | 88.84 |
| KXG20618 | Sorghum | cytosol, plastid | 69.59 | 81.32 |
| AT2G35635.1 | Thale cress | cytosol | 38.24 | 79.22 |
| AT1G31340.1 | Thale cress | cytosol | 38.56 | 78.85 |
| KXG20644 | Sorghum | cytosol | 93.73 | 78.48 |
| KXG29523 | Sorghum | cytosol | 93.73 | 78.48 |
| AT3G52590.1 | Thale cress | cytosol | 28.21 | 70.31 |
| AT2G36170.1 | Thale cress | cytosol | 28.21 | 70.31 |
| AT5G37640.1 | Thale cress | cytosol | 66.77 | 66.15 |
| VIT_19s0177g00070.t01 | Wine grape | cytosol | 93.73 | 65.43 |
| AT4G05320.2 | Thale cress | cytosol | 93.73 | 65.43 |
| Solyc07g064130.1.1 | Tomato | nucleus | 93.42 | 65.21 |
| EES05681 | Sorghum | cytosol | 93.73 | 65.14 |
| AT4G05050.2 | Thale cress | cytosol | 46.4 | 64.63 |
| AT3G62250.1 | Thale cress | cytosol | 31.03 | 63.06 |
| AT2G47110.1 | Thale cress | cytosol | 30.72 | 62.42 |
| AT1G23410.1 | Thale cress | cytosol | 29.15 | 59.62 |
| AT5G20620.1 | Thale cress | cytosol | 71.16 | 59.42 |
| PGSC0003DMT400027156 | Potato | cytosol | 70.22 | 58.79 |
| VIT_19s0177g00040.t01 | Wine grape | cytosol | 70.22 | 58.79 |
| Zm00001d053838_P005 | Maize | cytosol, plastid | 93.73 | 55.89 |
| VIT_14s0036g00990.t01 | Wine grape | cytosol | 93.73 | 55.58 |
| Zm00001d015327_P001 | Maize | cytosol | 92.48 | 55.35 |
| AT5G03240.3 | Thale cress | cytosol | 47.65 | 49.67 |
| OQU76939 | Sorghum | cytosol, plastid | 70.22 | 49.23 |
| KRH20404 | Soybean | cytosol | 70.22 | 49.02 |
| Os02t0161900-01 | Rice | extracellular, vacuole | 70.22 | 46.28 |
| KRH50099 | Soybean | cytosol, endoplasmic reticulum, nucleus | 70.53 | 42.21 |
| KRH20401 | Soybean | cytosol | 70.53 | 42.21 |
| AT3G09790.2 | Thale cress | cytosol | 60.5 | 30.59 |
Protein Annotations
| MapMan:19.2.2.1.1 | Gene3D:3.10.20.90 | EntrezGene:842845 | ProteinID:AEE34362.1 | ArrayExpress:AT1G65350 | EnsemblPlantsGene:AT1G65350 |
| RefSeq:AT1G65350 | TAIR:AT1G65350 | RefSeq:AT1G65350-TAIR-G | EnsemblPlants:AT1G65350.1 | TAIR:AT1G65350.1 | Unigene:At.66106 |
| UniProt:F4I9X6 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006511 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000626 | RefSeq:NP_176714.4 |
| PFAM:PF00240 | PO:PO:0000013 | PO:PO:0005020 | PO:PO:0007098 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009046 | PO:PO:0020100 |
| PO:PO:0025022 | PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 | SMART:SM00213 | SUPFAM:SSF54236 |
| Symbol:UBQ13 | UniParc:UPI0001A7B1E6 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom |
| SEG:seg | : | : | : | : | : |
Description
UBQ13Ubiquitin 13 [Source:UniProtKB/TrEMBL;Acc:F4I9X6]
Coordinates
chr1:-:24272518..24277275
Molecular Weight (calculated)
35399.8 Da
IEP (calculated)
8.787
GRAVY (calculated)
-0.388
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADNIQKES TLHLVLRLRG GMQIFVKTLT GKTITLEVES SDTIDNVKAK IQDKEWIPPD QQRLIFAGKQ
201: LEDGRTLADY NIQKESTLHL VLRLRGGMQI FVKTLTGKTI TLEVESSGTI DNVKAKIQDK EGIPPDQQRL IFAGKQLEGG PGGGGGHFQK AEALAFLADY
301: NIQKESTLHL VLRLRGGSF
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADNIQKES TLHLVLRLRG GMQIFVKTLT GKTITLEVES SDTIDNVKAK IQDKEWIPPD QQRLIFAGKQ
201: LEDGRTLADY NIQKESTLHL VLRLRGGMQI FVKTLTGKTI TLEVESSGTI DNVKAKIQDK EGIPPDQQRL IFAGKQLEGG PGGGGGHFQK AEALAFLADY
301: NIQKESTLHL VLRLRGGSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.