Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G087800.1 | Wheat | extracellular | 40.05 | 89.47 |
| TraesCS7A01G453500.1 | Wheat | cytosol | 39.79 | 88.89 |
| AT2G35635.1 | Thale cress | cytosol | 32.2 | 79.87 |
| AT1G31340.1 | Thale cress | cytosol | 32.46 | 79.49 |
| AT5G03240.3 | Thale cress | cytosol | 60.21 | 75.16 |
| AT4G02890.3 | Thale cress | cytosol | 59.95 | 75.08 |
| AT1G65350.1 | Thale cress | cytosol | 59.42 | 71.16 |
| AT2G36170.1 | Thale cress | cytosol | 22.77 | 67.97 |
| AT3G52590.1 | Thale cress | cytosol | 22.77 | 67.97 |
| AT5G37640.1 | Thale cress | cytosol | 53.93 | 63.98 |
| AT1G55060.1 | Thale cress | cytosol | 37.17 | 61.74 |
| AT3G62250.1 | Thale cress | cytosol | 23.56 | 57.32 |
| AT2G47110.1 | Thale cress | cytosol | 23.3 | 56.69 |
| AT1G23410.1 | Thale cress | cytosol | 23.04 | 56.41 |
| AT4G05320.2 | Thale cress | cytosol | 59.95 | 50.11 |
| PGSC0003DMT400037403 | Potato | cytosol | 59.69 | 42.78 |
| AT4G05050.2 | Thale cress | cytosol | 20.16 | 33.62 |
| AT3G09790.2 | Thale cress | cytosol | 35.86 | 21.71 |
Protein Annotations
| MapMan:19.2.2.1.1 | Gene3D:3.10.20.90 | EntrezGene:831899 | EntrezGene:832184 | UniProt:A0A178UPB8 | ProteinID:AAB53929.1 |
| ProteinID:AED92867.1 | EMBL:AF296832 | ArrayExpress:AT5G20620 | EnsemblPlantsGene:AT5G20620 | RefSeq:AT5G20620 | TAIR:AT5G20620 |
| RefSeq:AT5G20620-TAIR-G | EnsemblPlants:AT5G20620.1 | TAIR:AT5G20620.1 | Unigene:At.26012 | ProteinID:CAA31331.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR000626 | RefSeq:NP_568397.1 | ProteinID:OAO95350.1 | UniProt:P0CH32 | PFAM:PF00240 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR45095 | PANTHER:PTHR45095:SF2 | SMART:SM00213 |
| SUPFAM:SSF54236 | Symbol:UBQ4 | UniParc:UPI0000162540 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS |
| InterPro:Ubiquitin_dom | : | : | : | : | : |
Description
UBQ4Polyubiquitin 4 [Source:UniProtKB/Swiss-Prot;Acc:P0CH32]
Coordinates
chr5:-:6973070..6974962
Molecular Weight (calculated)
42788.7 Da
IEP (calculated)
7.853
GRAVY (calculated)
-0.437
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG SF
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG SF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.