Factsheet for TraesCS6A01G087800.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20620.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT5G20620.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT5G20620.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G465300.1	Wheat	cytosol, golgi	43.86	97.4
TraesCS2A01G475100.1	Wheat	cytosol	42.69	94.81
TraesCS7A01G466500.1	Wheat	cytosol	87.72	93.75
TraesCS5A01G073800.1	Wheat	cytosol	44.44	92.68
TraesCS2A01G408200.1	Wheat	cytosol	88.3	92.64
TraesCS7A01G506300.1	Wheat	cytosol, plastid	73.1	81.7
TraesCS5A01G224000.1	Wheat	cytosol	71.93	80.39
TraesCS6A01G147500.1	Wheat	cytosol	71.34	79.74
TraesCS1A01G202800.1	Wheat	cytosol	70.18	77.42
TraesCS7A01G141700.1	Wheat	cytosol	70.18	77.42
TraesCS7A01G453500.1	Wheat	cytosol	73.1	73.1
TraesCS4A01G086300.1	Wheat	cytosol	49.12	70.0
TraesCS4A01G306500.1	Wheat	cytosol	49.71	65.89
TraesCS5A01G551700.1	Wheat	cytosol	60.23	64.38
TraesCS2A01G408500.1	Wheat	cytosol	85.38	63.76
TraesCS7A01G453600.1	Wheat	cytosol	88.3	63.71
TraesCS6A01G087100.1	Wheat	cytosol	84.8	63.32
TraesCS7A01G465600.1	Wheat	cytosol	84.21	62.88
TraesCS4A01G086400.1	Wheat	cytosol	47.95	62.12
TraesCS3A01G503800.1	Wheat	cytosol	44.44	61.79
TraesCS3A01G504300.1	Wheat	cytosol	56.14	61.15
TraesCS3A01G504200.1	Wheat	cytosol	56.14	61.15
TraesCS6A01G148100.1	Wheat	cytosol	47.37	60.0
TraesCS7A01G105400.1	Wheat	cytosol	50.29	59.31
TraesCS7A01G487500.1	Wheat	cytosol	47.95	58.99
TraesCS2A01G458100.1	Wheat	cytosol	48.54	58.45
TraesCS2A01G458000.1	Wheat	cytosol	48.54	58.45
TraesCS7A01G466200.1	Wheat	cytosol	49.71	57.82
TraesCS7A01G105500.1	Wheat	cytosol	46.2	57.66
TraesCS1A01G397400.1	Wheat	cytosol	51.46	56.77
TraesCS1A01G105400.1	Wheat	cytosol	51.46	56.77
TraesCS1A01G397500.1	Wheat	golgi, unclear	51.46	56.77
TraesCS3A01G040300.1	Wheat	cytosol	51.46	56.41
TraesCS4A01G077000.1	Wheat	cytosol	49.71	53.8
TraesCS1A01G166000.1	Wheat	unclear	50.88	53.7
TraesCS2A01G458800.1	Wheat	cytosol	40.94	50.72
TraesCS7A01G453300.1	Wheat	cytosol	88.89	50.0
TraesCS6A01G112400.1	Wheat	cytosol	44.44	49.67
TraesCS6A01G136700.1	Wheat	cytosol	44.44	49.67
TraesCS2A01G458600.1	Wheat	cytosol	40.35	49.64
TraesCS7A01G453400.1	Wheat	cytosol	43.86	49.34
TraesCS5A01G196400.1	Wheat	cytosol	40.35	48.25
TraesCS3A01G504500.1	Wheat	cytosol	63.16	48.21
TraesCS1A01G227100.1	Wheat	cytosol	47.37	47.93
TraesCS5A01G196700.1	Wheat	cytosol	37.43	47.41
TraesCS3A01G504100.1	Wheat	cytosol, mitochondrion	61.99	47.32
TraesCS5A01G292600.1	Wheat	cytosol	46.78	47.06
AT5G03240.3	Thale cress	cytosol	84.21	47.06
TraesCS6A01G266000.1	Wheat	cytosol	88.89	46.63
TraesCS3A01G504400.1	Wheat	cytosol	59.65	45.54
TraesCS7A01G027400.1	Wheat	cytosol	55.56	43.58
TraesCS6A01G119700.2	Wheat	cytosol	56.73	42.36
AT5G20620.1	Thale cress	cytosol	89.47	40.05
TraesCS2A01G093300.1	Wheat	cytosol	33.92	39.46
TraesCS3A01G040600.1	Wheat	cytosol	50.88	37.18
TraesCS3A01G504600.1	Wheat	nucleus	60.23	34.56
TraesCS3A01G504000.1	Wheat	cytosol	58.48	33.56
TraesCS3A01G503700.1	Wheat	cytosol, mitochondrion	29.24	32.26
PGSC0003DMT400037403	Potato	cytosol	84.8	27.2
TraesCS1A01G313500.3	Wheat	cytosol, plastid	57.89	16.69

Protein Annotations

EnsemblPlants:TraesCS6A01G087800.1	EnsemblPlantsGene:TraesCS6A01G087800	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	PANTHER:PTHR10666
PANTHER:PTHR10666:SF242	PFAM:PF00240	PFscan:PS50053	PRINTS:PR00348	ScanProsite:PS00299	SignalP:SignalP-noTM
SMART:SM00213	SUPFAM:SSF54236	TIGR:cd01803	MapMan:19.2.2.1.1	:	:

Description

No Description!

Coordinates

chr6A:-:55892278..55893250

Molecular Weight (calculated)

19428.6 Da

IEP (calculated)

7.509

GRAVY (calculated)

-0.307

Length

171 amino acids

Sequence
(BLAST)

001: MFPFNCSLLW VYFTLYLQMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR LRGGMQIFVK
101: TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG Q

Best Arabidopsis Sequence Match ( AT4G05050.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGF

Arabidopsis Description

UBQ11Polyubiquitin [Source:UniProtKB/TrEMBL;Acc:Q8H0Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.