Factsheet for TraesCS5A01G224000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35635.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT2G35635.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT2G35635.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G176000.1	Wheat	cytosol	99.35	99.35
TraesCS6A01G147500.1	Wheat	cytosol	98.69	98.69
TraesCS7A01G506300.1	Wheat	cytosol, plastid	98.69	98.69
TraesCS6D01G136800.1	Wheat	cytosol	92.81	97.93
AT2G35635.1	Thale cress	cytosol	98.04	97.4
TraesCS7A01G465300.1	Wheat	cytosol, golgi	48.37	96.1
CDY31710	Canola	cytosol	98.69	95.57
CDX84182	Canola	cytosol	98.69	94.97
TraesCS2A01G475100.1	Wheat	cytosol	47.06	93.51
TraesCS1A01G202800.1	Wheat	cytosol	94.12	92.9
TraesCS5A01G073800.1	Wheat	cytosol	49.02	91.46
TraesCS7A01G141700.1	Wheat	cytosol	90.85	89.68
GSMUA_Achr4P04260_001	Banana	cytosol	58.17	85.58
TraesCS7A01G466500.1	Wheat	cytosol	79.74	76.25
TraesCS2A01G408200.1	Wheat	cytosol	79.74	74.85
TraesCS6A01G087800.1	Wheat	extracellular	80.39	71.93
HORVU6Hr1G029050.1	Barley	cytosol	91.5	70.71
TraesCS4A01G086300.1	Wheat	cytosol	52.94	67.5
TraesCS7A01G453500.1	Wheat	cytosol	71.24	63.74
TraesCS4A01G306500.1	Wheat	cytosol	52.94	62.79
Zm00001d020511_P001	Maize	plastid	76.47	61.26
TraesCS4A01G086400.1	Wheat	cytosol	50.98	59.09
TraesCS6A01G148100.1	Wheat	cytosol	50.33	57.04
TraesCS7A01G466200.1	Wheat	cytosol	54.25	56.46
TraesCS2A01G458000.1	Wheat	cytosol	52.29	56.34
TraesCS2A01G458100.1	Wheat	cytosol	52.29	56.34
TraesCS7A01G487500.1	Wheat	cytosol	50.98	56.12
TraesCS1A01G105400.1	Wheat	cytosol	55.56	54.84
TraesCS1A01G397400.1	Wheat	cytosol	55.56	54.84
TraesCS1A01G397500.1	Wheat	golgi, unclear	55.56	54.84
TraesCS3A01G504200.1	Wheat	cytosol	54.9	53.5
TraesCS5A01G551700.1	Wheat	cytosol	54.9	52.5
TraesCS2A01G408500.1	Wheat	cytosol	77.78	51.97
TraesCS1A01G166000.1	Wheat	unclear	54.9	51.85
TraesCS3A01G504300.1	Wheat	cytosol	52.94	51.59
TraesCS7A01G453600.1	Wheat	cytosol	79.74	51.48
TraesCS4A01G077000.1	Wheat	cytosol	52.94	51.27
TraesCS7A01G465600.1	Wheat	cytosol	76.47	51.09
TraesCS6A01G087100.1	Wheat	cytosol	76.47	51.09
TraesCS3A01G040300.1	Wheat	cytosol	50.33	49.36
TraesCS2A01G458800.1	Wheat	cytosol	44.44	49.28
TraesCS7A01G105400.1	Wheat	cytosol	46.41	48.97
TraesCS2A01G458600.1	Wheat	cytosol	43.79	48.2
TraesCS3A01G503800.1	Wheat	cytosol	38.56	47.97
TraesCS7A01G105500.1	Wheat	cytosol	42.48	47.45
TraesCS5A01G196700.1	Wheat	cytosol	41.83	47.41
TraesCS5A01G196400.1	Wheat	cytosol	43.14	46.15
TraesCS1A01G227100.1	Wheat	cytosol	50.33	45.56
TraesCS7A01G453300.1	Wheat	cytosol	80.39	40.46
TraesCS3A01G504100.1	Wheat	cytosol, mitochondrion	56.86	38.84
TraesCS3A01G504500.1	Wheat	cytosol	56.21	38.39
TraesCS2A01G093300.1	Wheat	cytosol	36.6	38.1
TraesCS6A01G266000.1	Wheat	cytosol	80.39	37.73
TraesCS3A01G504400.1	Wheat	cytosol	54.9	37.5
TraesCS5A01G292600.1	Wheat	cytosol	41.18	37.06
TraesCS7A01G027400.1	Wheat	cytosol	52.29	36.7
TraesCS3A01G040600.1	Wheat	cytosol	50.33	32.91
TraesCS7A01G453400.1	Wheat	cytosol	31.37	31.58
TraesCS6A01G136700.1	Wheat	cytosol	31.37	31.37
TraesCS6A01G112400.1	Wheat	cytosol	31.37	31.37
TraesCS6A01G119700.2	Wheat	cytosol	44.44	29.69
TraesCS3A01G503700.1	Wheat	cytosol, mitochondrion	30.07	29.68
TraesCS3A01G504600.1	Wheat	nucleus	54.25	27.85
TraesCS3A01G504000.1	Wheat	cytosol	53.59	27.52
TraesCS1A01G313500.3	Wheat	cytosol, plastid	52.94	13.66

Protein Annotations

MapMan:19.2.2.3.1	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626
InterPro:Nedd8-like	PFAM:PF00240	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666
PANTHER:PTHR10666:SF230	SMART:SM00213	SUPFAM:SSF54236	EnsemblPlantsGene:TraesCS5A01G224000	EnsemblPlants:TraesCS5A01G224000.1	InterPro:Ubiquitin
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	TIGR:cd01803	TIGR:cd01806	SEG:seg

Description

No Description!

Coordinates

chr5A:-:439551827..439553424

Molecular Weight (calculated)

17116.7 Da

IEP (calculated)

5.849

GRAVY (calculated)

-0.450

Length

153 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTVDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGY

Best Arabidopsis Sequence Match ( AT1G31340.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGFGLL

Arabidopsis Description

RUB1RUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178W1F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.