Factsheet for TraesCS1A01G166000.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G182700.1	Wheat	cytosol	100.0	100.0
TraesCS1D01G174700.1	Wheat	cytosol	100.0	100.0
TraesCS7A01G465300.1	Wheat	cytosol, golgi	46.3	97.4
TraesCS2A01G475100.1	Wheat	cytosol	45.06	94.81
TraesCS5A01G073800.1	Wheat	cytosol	46.91	92.68
TraesCS1A01G105400.1	Wheat	cytosol	82.72	86.45
TraesCS1A01G397500.1	Wheat	golgi, unclear	82.72	86.45
TraesCS1A01G397400.1	Wheat	cytosol	82.1	85.81
TraesCS4A01G086300.1	Wheat	cytosol	51.85	70.0
TraesCS4A01G306500.1	Wheat	cytosol	52.47	65.89
TraesCS4A01G086400.1	Wheat	cytosol	51.23	62.88
TraesCS2A01G458100.1	Wheat	cytosol	53.09	60.56
TraesCS2A01G458000.1	Wheat	cytosol	52.47	59.86
TraesCS7A01G487500.1	Wheat	cytosol	51.23	59.71
TraesCS6A01G148100.1	Wheat	cytosol	49.38	59.26
Zm00001d032616_P001	Maize	plastid	56.17	58.33
KXG38267	Sorghum	cytosol	56.79	57.5
TraesCS7A01G506300.1	Wheat	cytosol, plastid	52.47	55.56
TraesCS5A01G224000.1	Wheat	cytosol	51.85	54.9
TraesCS7A01G466500.1	Wheat	cytosol	53.7	54.38
TraesCS6A01G147500.1	Wheat	cytosol	51.23	54.25
TraesCS1A01G202800.1	Wheat	cytosol	51.85	54.19
TraesCS7A01G141700.1	Wheat	cytosol	51.85	54.19
TraesCS2A01G408200.1	Wheat	cytosol	54.32	53.99
TraesCS4A01G077000.1	Wheat	cytosol	52.47	53.8
Os10t0491801-00	Rice	cytosol	47.53	52.38
TraesCS2A01G458800.1	Wheat	cytosol	43.83	51.45
TraesCS6A01G087800.1	Wheat	extracellular	53.7	50.88
TraesCS7A01G453500.1	Wheat	cytosol	53.09	50.29
TraesCS2A01G458600.1	Wheat	cytosol	41.98	48.92
TraesCS1A01G227100.1	Wheat	cytosol	50.62	48.52
TraesCS7A01G466200.1	Wheat	cytosol	43.83	48.3
TraesCS5A01G196400.1	Wheat	cytosol	42.59	48.25
TraesCS5A01G196700.1	Wheat	cytosol	39.51	47.41
TraesCS6A01G087100.1	Wheat	cytosol	57.41	40.61
TraesCS7A01G453600.1	Wheat	cytosol	58.02	39.66
TraesCS3A01G504200.1	Wheat	cytosol	38.27	39.49
TraesCS2A01G093300.1	Wheat	cytosol	35.8	39.46
TraesCS5A01G551700.1	Wheat	cytosol	38.89	39.38
TraesCS2A01G408500.1	Wheat	cytosol	55.56	39.3
HORVU1Hr1G043930.8	Barley	plastid	99.38	38.24
TraesCS3A01G504300.1	Wheat	cytosol	37.04	38.22
TraesCS7A01G465600.1	Wheat	cytosol	53.7	37.99
TraesCS7A01G105400.1	Wheat	cytosol	30.86	34.48
TraesCS7A01G105500.1	Wheat	cytosol	28.4	33.58
TraesCS3A01G040300.1	Wheat	cytosol	30.25	31.41
TraesCS7A01G453300.1	Wheat	cytosol	58.02	30.92
TraesCS3A01G504500.1	Wheat	cytosol	40.74	29.46
TraesCS3A01G503800.1	Wheat	cytosol	22.22	29.27
TraesCS3A01G504100.1	Wheat	cytosol, mitochondrion	39.51	28.57
TraesCS6A01G266000.1	Wheat	cytosol	57.41	28.53
TraesCS3A01G503700.1	Wheat	cytosol, mitochondrion	27.16	28.39
TraesCS5A01G292600.1	Wheat	cytosol	29.63	28.24
TraesCS3A01G504400.1	Wheat	cytosol	38.27	27.68
TraesCS7A01G027400.1	Wheat	cytosol	37.04	27.52
TraesCS3A01G040600.1	Wheat	cytosol	32.1	22.22
TraesCS3A01G504000.1	Wheat	cytosol	38.89	21.14
TraesCS3A01G504600.1	Wheat	nucleus	37.65	20.47
TraesCS6A01G119700.2	Wheat	cytosol	19.75	13.97
TraesCS7A01G453400.1	Wheat	cytosol	11.11	11.84
TraesCS6A01G136700.1	Wheat	cytosol	11.11	11.76
TraesCS6A01G112400.1	Wheat	cytosol	11.11	11.76
TraesCS1A01G313500.3	Wheat	cytosol, plastid	37.04	10.12

Protein Annotations

MapMan:17.1.3.1.29	Gene3D:2.20.25.660	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038582	PFAM:PF00240	PFAM:PF01599	PRINTS:PR00348
ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF235	InterPro:Ribosomal_S27a	InterPro:Ribosomal_zn-bd
InterPro:S27a-like_sf	SMART:SM00213	SMART:SM01402	SUPFAM:SSF54236	SUPFAM:SSF57829	EnsemblPlantsGene:TraesCS1A01G166000
EnsemblPlants:TraesCS1A01G166000.1	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	TIGR:cd01803
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:298621356..298621844

Molecular Weight (calculated)

18066.6 Da

IEP (calculated)

9.369

GRAVY (calculated)

-0.733

Length

162 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYSTPKK VKHEREKTPL
101: AVLGYYRVDD ATGKVERLRK ECPNPDCGAG TFMAAHADRH ACGKCGLTYA YAEAQSPEID SD

Best Arabidopsis Sequence Match ( AT2G47110.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE

Arabidopsis Description

RPS27ABUBQ6 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.